Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq9958 248 6e-61 seq158 127 1e-24 >seq9958 Length=1759816 Score = 248 bits (274), Expect = 6e-61 Identities = 596/893 (67%), Gaps = 14/893 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| | || ||| | | || || ||||| | ||| |||||| |||| | ||| Sbjct 1380499 CCTCTTAGTGAGGAGGAGGCAAATTTTCCTATTGCATTCTCCATGGTGATCCACAATAAG 1380440 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | |||||||| || |||||| | | || || ||||| ||| | |||||||| Sbjct 1380439 ATCGAGATGTTTGAACGACTCCTGCGATCTATTTACGCTCCTCAAAACGTGTACTGTGTG 1380380 Query 107808 CACGTGGATGTGAAGTC--CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 ||||| || |||||| | | | || ||||| || ||| || || ||| |||||| Sbjct 1380379 CACGTTGACCAGAAGTCTTCTCCG-GATTTTCACAG-GGCTGTTCAGAACATAGTTTCCT 1380322 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 |||| |||||||||||||| | || || || | ||||| || || || |||||| Sbjct 1380321 GCTTTCCCAATGTCTTCATATCTAGCAAATTAGAAAGAGTGGTGTACGCTTCGTGGTCCC 1380262 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 ||||||| || ||||||||||| ||| | ||| |||| || | || | ||||| | Sbjct 1380261 GAGTGCAGGCAGACCTGAACTGCATGAACGACCTGCTGCAATCCGACGTCCAATGGAGAT 1380202 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | ||||| || || ||||||||||| ||||| || ||||| |||||||| ||| Sbjct 1380201 ACCTTCTGAACACCTGTGGGACAGACTTTCCCATCAAAACCAACAGGGAGATGGTGATGG 1380142 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG-AGGTACCTTCTGAGTC-Caa 108103 | || || | | || || | |||||| | ||| | | | ||| | || | ||| Sbjct 1380141 CTCTGAAATTCCTCAACGGGAGGAACAGCCTAGAGACCGAACAAACCAGC--AGCCACAA 1380084 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 ||| |||||| | |||| ||| ||||| || ||||| | || || ||| Sbjct 1380083 GAAACGACGCTGGGAGTACCACTACGAGGTCACCGACACCATCCGGGGGACAGGCGAGAG 1380024 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 |||| ||| || || | ||||||||| | || || || || ||||||| ||| Sbjct 1380023 GAAGAGCCCGCCGCCCATCAGCACCCCCATGTTCTCGGGAAACGCGTACTTTGTGGTCTC 1379964 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 | |||||||| || | || | ||| | | || | | | || |||| Sbjct 1379963 GAGGGCCTTTGTGAAATACGTGGTGCGGAACAGAGAGGCGCAGAACTTCATGGAGTGGGA 1379904 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 || ||||| || ||||| ||||| ||| | |||||||| |||||| | || | | Sbjct 1379903 GAAGGACACGTACAGCCCAGACGAGCACATGTGGGCCACGCTTCAGAGGATGCCTTCTGT 1379844 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 || || || | || || ||| || || | || |||||| || ||||| | Sbjct 1379843 TCCCGGATCGGCGCCCGCAAACAGCAAATACCAAGTGTCGGACATGCAGGCTCTCGCCCG 1379784 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | |||||||||| |||| | || || || | || || || ||||| || || Sbjct 1379783 GGCCGTCAAGTGGTCTTACCTAGCAGGGGACGTGAACAAAGGAGCTCCTTACTACCCGTG 1379724 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | | || | | |||| ||| |||| | ||||| || |||||||| ||| || Sbjct 1379723 CACGGGGGCCTACAGGAGAGCCGTCTGTGTGTACGGAGCTGGGGACCTCCTGTGG---CT 1379667 Query 108524 CCAGA---ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 || || | || |||||||| ||||| ||||||||||| ||| ||||||| Sbjct 1379666 CCTGAGTCAGCAGCACCTCTTTGCAAATAAGTTTGACCCAGAGGTTGATGATA 1379614 >seq158 Length=528424 Score = 127 bits (140), Expect = 1e-24 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| |||||||||||| | ||||| ||||||||||| || ||||| || ||| Sbjct 371942 AACTTTGAACGACTGCTGCGAGCCATTTATGCGCCTCAGAACATTTATTGTGTTCATGTG 371883 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 |||| || ||| | || | |||| || | | |||| |||||| |||||| Sbjct 371882 GATGAAAAAGCCCAGCACTCTGTAAAAGTTGCCATTCGGAGCATTGCTTCCTGTTTCCCC 371823 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||||||||||| |||| | || ||||| ||||| ||| || | || ||| Sbjct 371822 AATGTCTTCATGGTCAGTCGGGCTGTGAGTGTGGTCTATGCTGGTTGGCCCCGTGTCCAA 371763 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGAAGTACTT 107989 |||||||| ||||| |||| ||| | || | || |||||| ||||||||||| Sbjct 371762 GCTGACCTTAACTGCATGGCTGACCT-CTATAATGC-CAGTGCAGAGTGGAAGTACTT 371707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348225590725320