Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq10130 141 2e-28 >seq10130 Length=961328 Score = 141 bits (156), Expect = 2e-28 Identities = 759/1198 (63%), Gaps = 30/1198 (3%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | ||||| || |||||| || || || || || || | || ||| Sbjct 294823 TACAACTTCTTCGGCTTCAAGACCCTGGAGCGCTCCTACCTGCTGAAGATCAACGGGAAG 294882 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | || || ||||||||| | ||||| ||| | || ||||| ||| ||| Sbjct 294883 GTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGTGTCGGTGGGGATCCACGGCCGGGAC 294942 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || || || |||||||||||| | || || ||| | || || ||| | Sbjct 294943 ATCGACGCCGCCATCGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACGCACGCCTCG 295002 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 |||||||||||||||||||| ||| | |||||| | ||||| || || ||| Sbjct 295003 CCGACGCTCTTCAACGCCGGCACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTGGCC 295062 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCT 249117 ||| | |||||| |||| ||||| || |||||||| || ||| || || || Sbjct 295063 ATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCC 295122 Query 249118 AAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATC 249177 || | || ||||| ||||| | | || | |||||| ||| ||| |||||| Sbjct 295123 AAGTCGGCCGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCTCGACGGGCAGCTACATC 295182 Query 249178 AAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACC 249237 || || || || | | || | || || | || || || | |||| Sbjct 295183 GCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCGATGCTGCGGGTCTACAACAACACC 295242 Query 249238 GCCAGGTTCATCAACCAGGCCGGGCGCCGAAAGGG--GTCG--TTCGCCATGTATTTGGA 249293 ||| | | | | |||||| ||| | | | ||| | || ||||||||||| |||| Sbjct 295243 GCCCGCTACGTGGACCAGGGCGG-CAACAAGAGGCCCGGCGCCTTCGCCATGTACCTGGA 295301 Query 249294 AGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCT 249353 ||||||| ||| | || || |||||||| |||| ||||||| ||||| ||| Sbjct 295302 GCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAGGA 295361 Query 249354 CATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGT 249413 | | || | ||||||||||||||||||||| || ||||| |||||||| | || || Sbjct 295362 GCAGCGGGCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAGGCGGGT 295421 Query 249414 CAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCATCGATC 249472 || | || || ||| | || | | ||| ||| | ||||| ||| ||| Sbjct 295422 GGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAGCGAGTGTCCCGG-CCTGGACGAGT 295480 Query 249473 TACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATCCAACGGCATCGGCAAG 249531 || | || ||||| | || ||| | || ||||| | | || | ||| Sbjct 295481 GCTGGGGGGAGGAGTTCGA-GACGCTCTACACAAAGTACGAGGCGGAGGGGCGGGTGAAG 295539 Query 249532 A---CAATCAAGGCTC-GGACCCTTTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGG 249587 | | ||||| | | | | | | || | | ||||| |||| ||||| || Sbjct 295540 AAGGTGGTGAAGGCCCAGCAGCTGTGGTACG-CCATCATCGAGTCGCAGACGGAGACCGG 295598 Query 249588 GGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGG 249647 ||| || | | ||| ||||| |||||| |||||| ||||| | | | || || Sbjct 295599 CACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGG 295658 Query 249648 TACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGAT 249707 |||||| | || ||||| | |||||| | | | | | |||||| ||| | Sbjct 295659 CACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGCAAGGACGAGGT 295718 Query 249708 TGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCACGTGAGGGCGGACAGGACGTT 249767 ||||||||||||||||| |||| ||| | | |||| | | | || |||| || Sbjct 295719 GGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCCGAGCGGACCTT 295778 Query 249768 CGACTTCGAGCGTCTTCACCGGACGGCGAAAC--AGGCGATC---AAAAACCTCAACAAG 249822 ||||||| || || || || || || ||| |||| || ||||| |||||| Sbjct 295779 CGACTTCAAGAAGCT-----GGCCGCCGTCACCAAGGTGATCGTGAAGAACCTGAACAAG 295833 Query 249823 GTGATTGATGTCAATTTTTACCC---CCTTGAGGAATGCAGGTTGTCCAACATGAAGCAC 249879 || || || | || | ||||| || |||| | | ||||||| | ||| Sbjct 295834 GTCATCGAGATAAACTACTACCCGGTCCCCGAGG---CCGAGCGCTCCAACAAGCGCCAC 295890 Query 249880 CGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTGATGGGATTCCCC 249939 || || || | ||||| |||| ||| ||||| || ||| ||||| | | ||| Sbjct 295891 CGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGCTACCCG 295950 Query 249940 TTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGAGACCATCTATCACG 249997 |||||| | ||||| | ||| || ||||| |||||||||||||| |||| Sbjct 295951 TTCGAGAGCGCCGAGGCGCAGCTGCTCAACGTCCAGATCTTCGAGACCATCTACCACG 296008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073626347306240