Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq483 116 3e-21 seq9955 111 1e-19 >seq483 Length=217099 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 215580 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 215639 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 215640 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 215699 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| | | ||||||||| | ||| || |||||| Sbjct 215700 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTCTTG 215759 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || ||||| |||||||| |||||||| Sbjct 215760 CCAGTGAGGGTCTTGACAAAGATCTGCATGTT 215791 >seq9955 Length=1786201 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 3861 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 3920 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 3921 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3980 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | |||||||| || ||| || ||||| Sbjct 3981 ATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGGTCTTC 4040 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 4041 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| | | || ||| || ||||| ||| ||||||| ||| ||| | || ||| Sbjct 4089 ACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCC 4148 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 4149 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 4208 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 4209 ATCTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 4268 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || ||||| ||||||||||||||| || Sbjct 4269 CCAGTGAGGGTCTTGACAAAGATTTGCATGGTG 4301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395026183513780