Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10130 549 2e-151 seq9909 140 3e-28 seq9955 91.5 1e-13 seq348 89.7 5e-13 >seq10130 Length=961328 Score = 549 bits (608), Expect = 2e-151 Identities = 1090/1604 (68%), Gaps = 23/1604 (1%) Strand=Plus/Minus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||||| ||| ||||| ||| || | | || || || ||| |||||| ||| Sbjct 296397 CTGGATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATGTCCTCGCTCCACAGCCCGCG 296338 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| || |||| || ||| |||| || | || ||||||||||| | ||| || Sbjct 296337 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCG 296278 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| | | |||| || || ||||| ||||| ||||| || Sbjct 296277 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 296218 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 ||| || ||||| ||||| || |||| ||| || ||| |||| ||||||| | || Sbjct 296217 GGTGGAGGCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGAT 296158 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| | |||||||||||| |||| || ||| || |||||||| || Sbjct 296157 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGGGTC---TTCTCCCACATGTC 296101 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGC-TGCCTTCGTACGTTTCGTACGGACCATATA 22724 ||| || | ||| || || || | ||||| ||| |||||||| ||||| || || Sbjct 296100 GTACTGGAGCACCCCCCGGCT-GACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCT 296042 Query 22725 TCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 ||| || || |||||||| ||||||| |||| ||| || || ||||||||||| | Sbjct 296041 CCGCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGA 295982 Query 22785 TGTTCAATTCGGCGGCG--GCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842 ||| | | || ||| || |||| ||| |||| ||||||| | ||| ||||| Sbjct 295981 CGTTGA--GCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTC 295924 Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902 |||| |||||| ||||| || ||||| || |||| | || || | ||||| Sbjct 295923 GGCCAGACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAGCGCTCGGCCTC 295864 Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAAT---TTT 22959 ||| | || || | || ||||| ||||| || |||| |||| || || Sbjct 295863 GGGGACCGGGTAGTAGTTTATCTCGATGACCTTGTTC-AGGTTCT--TCACGATCACCTT 295807 Query 22960 CGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTAC--AACAAACTTGTTG 23017 || | | |||||| || | ||| | | | || || ||||| Sbjct 295806 GGTGACGGCGGCCAGCTTCTTGAAGTCG--AAGGTCCGCTCGGGCGTGACGTACATGTTG 295749 Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077 | |||||| ||||| || ||||| |||||||||||||| ||| ||| |||| || | Sbjct 295748 AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACC 295689 Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137 ||||| || || ||||| ||||| || ||||||| || ||||||||| || || ||| Sbjct 295688 TCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTG 295629 Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197 || | ||||||||||||||||| |||||||| ||||| ||||||||||||||| || Sbjct 295628 CAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCG 295569 Query 23198 CGCCACATAGTCTGAG-CGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTT 23255 ||||| ||| | | | | ||| | | ||| | || || ||||||||||| Sbjct 295568 TACCACAGCTGCTGGGCCTTCACCACCTTCTTC--ACCCGCCCCTCCGCCTCGTACTTTG 295511 Query 23256 GGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||| | || || || || | || | || ||| |||||||||| | | | |||| Sbjct 295510 TGTAGAGCGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGAC 295451 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 |||| || ||| || | || || || ||||| || || || || ||||| | Sbjct 295450 ACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACA 295391 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 | ||||||| || || | ||| ||| |||||| ||||| |||||||| |||| |||| Sbjct 295390 GGCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCA 295331 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| |||||||| ||||||||||| ||||| | ||| || ||||| || |||| Sbjct 295330 GGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCT 295271 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | ||||||||||| || ||||| ||||| ||||||||||| || | ||||||||||| | Sbjct 295270 TGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCA 295211 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 | |||||||| |||| ||| || | || | | || | | | | Sbjct 295210 GGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCTCA 295151 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 | | || ||||| ||| |||| || || || | ||||| || || || ||||||| Sbjct 295150 CCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGT 295091 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 ||||||||||||||||||| || || | || | || ||| || |||| |||| Sbjct 295090 AGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCC 295031 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 | || |||| ||| || ||||| ||||||||| || | | ||||| | Sbjct 295030 GGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCA 294971 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | |||||||| ||||||||||| || |||||| ||||| || || | | ||||||| Sbjct 294970 GGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCA 294911 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | | ||||| || || | |||| || ||||| || || | ||| || || || | Sbjct 294910 TGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGCT 294851 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959 || || || || || || ||| ||| ||||| || ||| Sbjct 294850 CCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCG 294807 >seq9909 Length=2276304 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||||| |||||||||| ||||| || || |||||||| |||| || ||| Sbjct 1378327 ACCTCATCTTTACTTGTGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTG 1378268 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| ||| ||||||| | || | ||||| | |||||||||||||||||||||||| Sbjct 1378267 CCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTG 1378208 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGTCG 23226 |||||||| ||||||||||||||| || |||| | ||||| | | | |||| || Sbjct 1378207 CCCGTCTCTGTCTGCGACTCGATGATGGCGTGCCAGAGCTGCTGAGCCCTCACCACG-CG 1378149 Query 23227 CACGTACCTGCCTTCTTCCTCGTA 23250 | | |||||| || | |||||| Sbjct 1378148 CCTGGCCCTGCCCTCCTGCTCGTA 1378125 Score = 129 bits (142), Expect = 5e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| |||| || || || || ||||| || | ||||||| || | ||| | Sbjct 1377857 TTTCCACCCGTTTCATGAAGAGGTCTGGGATCCACAGGCCAAAGAACAGGTCTCTGGCCC 1377798 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| ||||||||||| |||| |||||||| || |||||||| || |||| Sbjct 1377797 TCTGCTCCTCTTTACCGGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCGTGCC 1377738 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| | |||||| || || ||||||| Sbjct 1377737 ACGGCTCCAGGTACATGGCAAAGGCCCCTGGTCTCT 1377702 >seq9955 Length=1786201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || ||||| || |||||| | || || || || Sbjct 4298 CATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4239 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || ||| | || ||||||||| ||| | || || ||||| Sbjct 4238 CGACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 4179 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||||||| ||||||| || || || || | Sbjct 4178 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAC 4119 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || | ||||| || | || ||||| || Sbjct 4118 CATCCAGAAAGAATCCACCCTCCGCCTGGTCCTCCGTCTCAGGGGTGG 4071 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | | || || || | Sbjct 4069 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGTAGGTGGAGCCCAGC 4010 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| ||| | || || ||||| Sbjct 4009 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCA 3951 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||||||| ||||||| || || || || || Sbjct 3950 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 3891 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | || ||||| || Sbjct 3890 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCAGGGGTGG 3843 >seq348 Length=361584 Score = 89.7 bits (98), Expect = 5e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||||||||| || || || ||||| || ||| || || || || || ||| || Sbjct 109560 GCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGGCTG 109501 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||||| | |||||||||||||||||||| || ||||||||| Sbjct 109500 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAG 109459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445709676225600