Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10130 284 2e-71 >seq10130 Length=961328 Score = 284 bits (314), Expect = 2e-71 Identities = 826/1261 (66%), Gaps = 8/1261 (1%) Strand=Plus/Minus Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 ||| ||||| || || || |||||||| || || | || || || || ||||| ||| Sbjct 295689 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTT 295630 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 || || ||||| || || ||| | || || || || || |||| || || || || || Sbjct 295629 GCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGC 295570 Query 63119 TTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAG 63177 | ||| | | || | ||||| | | || | || || ||||| | Sbjct 295569 GTACCACAGCTGCTGG-GCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTG 295511 Query 63178 TATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 | || | ||| |||||||| || ||||| | ||||| | ||||| || ||| Sbjct 295510 TGTAGAG-CGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGA 295452 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63296 ||||||| ||||| || || || ||| || |||| || || || || ||||| Sbjct 295451 CACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCAC 295392 Query 63297 AGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 || || || || || || || | | || ||||| || || || ||||| || || || Sbjct 295391 AG-GCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTC 295333 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 ||||| | | | || | |||||||| |||| ||| ||||| | | || |||| Sbjct 295332 CAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCT 295273 Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 ||||| || ||||| || | ||| | |||||||| || || || | || ||| || | Sbjct 295272 CTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCAC 295213 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT 63535 | ||||| || | || ||||| |||| ||| |||| || | | || || || Sbjct 295212 CAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCT 295153 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 | | | || || || || ||| || ||||| | ||||| | || | |||||| Sbjct 295152 CACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTC 295093 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 |||||||| || ||||| || || ||||| || || || ||||| |||| || | Sbjct 295092 GTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGG 295033 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 || | || || || || || | || || || |||||||| ||||| || || || || Sbjct 295032 CCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAG 294973 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63775 || ||||||||||| || || | ||| || |||| || || || || | || || Sbjct 294972 CAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCG 294913 Query 63776 CATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTT 63835 ||| | ||||||||| || | || | | || ||| || |||| || |||||| Sbjct 294912 CATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCG 294853 Query 63836 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63895 |||| || || || || || ||||||| || ||||| || ||| | || || | || Sbjct 294852 CTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGGA 294793 Query 63896 ATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAG 63954 ||||| ||||| | | || || |||| || | ||| || | || || | Sbjct 294792 GTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCCAGCGT-CTCCTTGGAGACCATGGGGG 294734 Query 63955 AATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 64014 | || || || || || || |||||| | | ||||||||||| || || || | Sbjct 294733 AGTGGCGGCCGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACA 294674 Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074 || || || |||||||| | || || | ||| || |||||||| || ||||| || | Sbjct 294673 CCTTCTTGGTCTCCTTGTGGATGTTGGAGACGGCGATCCTGGCGGCGAGGATGGCGTAGT 294614 Query 64075 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64134 | || || | || || ||||| || || || || || || ||||||| || || | Sbjct 294613 CGGGGTGCTTGGTGGTGAGGGTGGCCGCGATCTCTGCGGCGAGCGTGTCCAGCTCCACGG 294554 Query 64135 TTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATAT 64194 | || || || | || | || || || |||||||| | || | | || || | Sbjct 294553 TGGTGACGCCGCTGTACAGGCCCTGGATCACCTTCATGGTGATCTGCGTCGGGTCCACGA 294494 Query 64195 GATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGA 64254 |||| ||| | ||| ||||||| || || || |||||||||||||| ||||||| Sbjct 294493 AGTCCGCGTTCAGGCCGTAGCACAGCTTCTGTATGCGGGACGTGATTTTATCGAACATGA 294434 Query 64255 C 64255 | Sbjct 294433 C 294433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629737455710400