Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10130 284 2e-71 >seq10130 Length=961328 Score = 284 bits (314), Expect = 2e-71 Identities = 826/1261 (66%), Gaps = 8/1261 (1%) Strand=Plus/Minus Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||| ||||| || || || ||||||||||| || | || || || || ||||| ||| Sbjct 295689 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTT 295630 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 || || ||||| || || ||| | || || || || || |||| || || || || || Sbjct 295629 GCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGC 295570 Query 65912 TTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 65970 | ||| | | || | ||||| | | || | | || ||||| || Sbjct 295569 GTACCACAGCTGCTGG-GCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTG 295511 Query 65971 TATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 | || | ||| |||||||| || ||||| | ||||| || ||||| || ||| Sbjct 295510 TGTAGAG-CGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGA 295452 Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089 ||||||| ||||| || || || ||| || |||| || || || || ||||| Sbjct 295451 CACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCAC 295392 Query 66090 AGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 66148 || || || || | || |||| | || ||||| || || || ||||| || || || Sbjct 295391 AG-GCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTC 295333 Query 66149 GAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 ||||| | | | || | |||||||| |||| ||| ||||| | | || |||| Sbjct 295332 CAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCT 295273 Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 ||||| || ||||| || | ||| | |||||||| || || || | || ||| || | Sbjct 295272 CTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCAC 295213 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 | || ||||| | || ||||| |||| ||| ||||| || | | || || || Sbjct 295212 CAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCT 295153 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 | | | || || || || ||| || ||||| | ||||| | || | ||| || Sbjct 295152 CACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTC 295093 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 66448 ||||||||||| || || || ||| ||||| || || || ||||| |||| || | Sbjct 295092 GTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGG 295033 Query 66449 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508 || | || || || || || | || || || |||||||| ||||| || || || || Sbjct 295032 CCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAG 294973 Query 66509 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 66568 || ||||||||||| || || | ||| || |||| || || || || | || || Sbjct 294972 CAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCG 294913 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628 ||| | ||||||||| || | || | | ||| ||| || |||| || |||||| Sbjct 294912 CATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCG 294853 Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 66688 |||| || || || || || ||||||| || ||||| || ||| | || || | || Sbjct 294852 CTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGGA 294793 Query 66689 GTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAG 66747 |||||| ||||| | | || | |||| || | ||| || | || || | Sbjct 294792 GTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCCAGCGT-CTCCTTGGAGACCATGGGGG 294734 Query 66748 AATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 66807 | || || || || ||||| |||||| | | ||||||||||| || || || | Sbjct 294733 AGTGGCGGCCGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACA 294674 Query 66808 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAAT 66867 || || || || ||||| | || || ||||| || || ||||| | ||||| || | Sbjct 294673 CCTTCTTGGTCTCCTTGTGGATGTTGGAGACGGCGATCCTGGCGGCGAGGATGGCGTAGT 294614 Query 66868 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 66927 | || || | || || ||||| || || || || || || ||||||| || || | Sbjct 294613 CGGGGTGCTTGGTGGTGAGGGTGGCCGCGATCTCTGCGGCGAGCGTGTCCAGCTCCACGG 294554 Query 66928 TTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATAT 66987 | || || || | || | || ||||| |||||||| | || | | || || | Sbjct 294553 TGGTGACGCCGCTGTACAGGCCCTGGATCACCTTCATGGTGATCTGCGTCGGGTCCACGA 294494 Query 66988 GATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGA 67047 || | ||| | ||| || || | || || || || ||||||||||| ||||||| Sbjct 294493 AGTCCGCGTTCAGGCCGTAGCACAGCTTCTGTATGCGGGACGTGATTTTATCGAACATGA 294434 Query 67048 C 67048 | Sbjct 294433 C 294433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658089047511200