Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq297 145 7e-30 >seq297 Length=3848896 Score = 145 bits (160), Expect = 7e-30 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || || | ||| ||||||| || || || ||||| ||||||||||||||||| || Sbjct 2866599 AGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGC 2866540 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--CCGAG 21108 ||||| ||||||||||||||||| | |||||||||||| |||||||||||||| | || Sbjct 2866539 ACCCCCAGGCCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 2866480 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 ||||| ||||| || | |||| || || || || ||||| ||| |||||| || Sbjct 2866479 --ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAGCGGGAGGTCTGC 2866424 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 21282 TACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGG 21341 ||||| || ||||| || ||||||||||| |||||||| || ||||| || ||||| Sbjct 2862385 TACTCTGCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCCCCCTCCTCT 2862326 Query 21342 CGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 | || ||||||| | ||| |||||||||||||||| || ||||| || || Sbjct 2862325 CTCTCTGTGAAGCCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCCCAGATCTTC 2862266 Query 21402 ACGCC 21406 ||||| Sbjct 2862265 ACGCC 2862261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427722926366400