Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq9979 147 2e-30 >seq9979 Length=1655053 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 |||||||| ||| ||| ||| ||||||| || |||||||| |||||| | | | ||| Sbjct 1489328 CATTTCCCCACCTTCGCCTCCAAGGAGGACTGCAGCATCATCACGGACACGGCC-GCCAA 1489386 Query 91859 -CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || |||||||||||||| || |||| || |||||||| || | ||||| Sbjct 1489387 GCTCGAGCGCAGCGGCTTCTACTGGGGCCCGCTGGGAGTGGAGGAGGCCCACTGCATGCT 1489446 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 ||| || | | ||||||||||| || || ||||| ||| |||| ||||||||||| || Sbjct 1489447 CCGCGACGCCCCGCTGGGCAGCTTCCTGATCCGGGACAGCCGGCAGAAGGACGTCTTCTT 1489506 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 ||| ||||| || | | || || ||||| || ||| | || || |||||| Sbjct 1489507 CACCCTGTCCTACCTCGACAAGAAAGGGCCCGTGAGCGTGCGCATCGACTACAAG 1489561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356189402542540