Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10130 300 2e-76 >seq10130 Length=961328 Score = 300 bits (332), Expect = 2e-76 Identities = 829/1260 (66%), Gaps = 8/1260 (1%) Strand=Plus/Minus Query 79672 TCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 79731 || ||||||||||| || ||||| ||||| || | || || || || ||||| ||| Sbjct 295688 TCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTG 295629 Query 79732 CACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 79791 || || ||||| || || ||| | || || || || || |||| || || || || || Sbjct 295628 CAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCG 295569 Query 79792 TTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGT 79850 | ||| | | || | ||||| | | ||| | | || ||||| | ||| Sbjct 295568 TACCACAGCTGCTGG-GCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGT 295510 Query 79851 ATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909 || | ||| |||||||| || ||||| ||||| | || ||||| ||| |||| Sbjct 295509 GTAGAG-CGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGAC 295451 Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 |||||| ||||| || | || || || |||| || || || || ||||| | Sbjct 295450 ACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACA 295391 Query 79970 GAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 80028 | || || || || || |||| | |||||||| || || || ||||| || || || Sbjct 295390 G-GCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCC 295332 Query 80029 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGT 80088 ||||| | | | || | |||||||| |||| ||| ||||| | | || || | Sbjct 295331 AGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTC 295272 Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||||| || ||||| || | ||| | |||||||| || || || | || ||| || | Sbjct 295271 TTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACC 295212 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 | || ||||| | || ||||| |||| ||| ||||| || | | || || || Sbjct 295211 AGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCTC 295152 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 | | | || || || || ||| || ||||| | ||||| | || | ||| || Sbjct 295151 ACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCG 295092 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 ||||||||||| ||||| || || ||||| || || || ||||| |||| || | Sbjct 295091 TAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGC 295032 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || || || || || | || || || |||||||| ||||| || || ||||| Sbjct 295031 CGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGC 294972 Query 80389 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGC 80448 || ||||||||||| || || | || || |||| || || || |||| || ||| Sbjct 294971 AGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGC 294912 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | ||||||||| || | || | | ||| || || |||| || ||| || Sbjct 294911 ATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGC 294852 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 |||| || || || || || ||||||| || ||||| || ||| | || || | ||| Sbjct 294851 TCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGGAG 294792 Query 80569 TTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGA 80627 ||||| ||||| | | || | |||| || | ||| || | || || || Sbjct 294791 TTGAGGCGGTCCTTGTTCTCCAGGACGATGTCCAGCGT-CTCCTTGGAGACCATGGGGGA 294733 Query 80628 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 80687 || || || || || || |||||| | | ||||||||||| || || || | Sbjct 294732 GTGGCGGCCGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACAC 294673 Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 || || || |||||||| | || || ||||| || |||||||| | ||||| || || Sbjct 294672 CTTCTTGGTCTCCTTGTGGATGTTGGAGACGGCGATCCTGGCGGCGAGGATGGCGTAGTC 294613 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 || || | || || ||||| || || || || || || ||||||| || || || Sbjct 294612 GGGGTGCTTGGTGGTGAGGGTGGCCGCGATCTCTGCGGCGAGCGTGTCCAGCTCCACGGT 294553 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 80867 || || || | || | || ||||| |||||||| | || | | || || | Sbjct 294552 GGTGACGCCGCTGTACAGGCCCTGGATCACCTTCATGGTGATCTGCGTCGGGTCCACGAA 294493 Query 80868 ATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 || | ||| | ||| || || | || || || |||||||||||||| |||||||| Sbjct 294492 GTCCGCGTTCAGGCCGTAGCACAGCTTCTGTATGCGGGACGTGATTTTATCGAACATGAC 294433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718177400295200