Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10130 311 1e-79 >seq10130 Length=961328 Score = 311 bits (344), Expect = 1e-79 Identities = 846/1279 (66%), Gaps = 12/1279 (1%) Strand=Plus/Minus Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 || ||||| || || || ||||||||||| || | || || || || ||||| ||| Sbjct 295688 TCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTG 295629 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || || ||||| || || || | || || || || || |||| || || || || || Sbjct 295628 CAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCG 295569 Query 71875 TTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGT 71933 | ||| | | || | ||||| | | ||||| | | || ||||| | ||| Sbjct 295568 TACCACAGCTGCTGG-GCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGT 295510 Query 71934 ATATAATCGT-TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGA 71991 || | ||| |||||||| || ||||| ||| | ||| | || ||||| || | ||| Sbjct 295509 GTAGAG-CGTCTCGAACTCCTCCCCCCA-GCACTCGTCCAGGCCGGGACACTCGCTGGGA 295452 Query 71992 CACATCAATGACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCA 72050 ||||||| ||||| || | | || | || || |||| || || || || ||||| Sbjct 295451 CACATCAGGGACCAGTCCTGGTTGCTC-TCCACCCGCCTCATGAACAGGTCGGGGATCCA 295393 Query 72051 AAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 72109 || || || || || || |||| | |||||||| || || || ||||| || || | Sbjct 295392 CAG-GCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCT 295334 Query 72110 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169 | ||||| | | | || | |||||||| |||| ||| ||||| | | || |||| Sbjct 295333 CCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCC 295274 Query 72170 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 72229 ||||| || ||||| || | ||| | |||||||| || || || | || ||| || | Sbjct 295273 TCTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCA 295214 Query 72230 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGC 72289 | || ||||| || ||||| |||| ||| ||||| || | | || || || Sbjct 295213 CCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGC 295154 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 | | | | || || || || ||| || ||||| | ||||| | || | ||| | Sbjct 295153 TCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGT 295094 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 | ||||||||||| || || || ||| ||||| || || || ||||| |||| || Sbjct 295093 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCG 295034 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 | || | || || || || || | || || || |||||||| ||||| || || |||| Sbjct 295033 GCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACA 294974 Query 72470 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACAC 72529 | || ||||||||||| || || | || || |||| || || || |||| || | Sbjct 294973 GCAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGC 294914 Query 72530 GCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATT 72589 |||| | ||| ||||| || | || | | ||| || || |||| || |||||| Sbjct 294913 GCATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGC 294854 Query 72590 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 72649 |||| || || || || || ||||||| || ||||| || ||| | || || | | Sbjct 294853 GCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGG 294794 Query 72650 AATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGA 72708 | ||||| ||||| | | || || |||| || | ||| || | || || Sbjct 294793 AGTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCCAGCGT-CTCCTTGGAGACCATGGGG 294735 Query 72709 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 72768 || || || || || || || |||||| | | ||||||||||| || || || Sbjct 294734 GAGTGGCGGCCGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACGTCGCTGAAC 294675 Query 72769 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 72828 | || || || |||||||| | || || ||||| || |||||||| || ||||| || Sbjct 294674 ACCTTCTTGGTCTCCTTGTGGATGTTGGAGACGGCGATCCTGGCGGCGAGGATGGCGTAG 294615 Query 72829 TCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACC 72888 || || || | || || ||||| || || ||||| || || ||||||| || || Sbjct 294614 TCGGGGTGCTTGGTGGTGAGGGTGGCCGCGATCTCTGCGGCGAGCGTGTCCAGCTCCACG 294555 Query 72889 GTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATA 72948 || || || || | || | || ||||| |||||||| | || | | || || | Sbjct 294554 GTGGTGACGCCGCTGTACAGGCCCTGGATCACCTTCATGGTGATCTGCGTCGGGTCCACG 294495 Query 72949 TGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATA 73008 || | ||| | ||| || || | || || || |||||||||||||| ||||| Sbjct 294494 AAGTCCGCGTTCAGGCCGTAGCACAGCTTCTGTATGCGGGACGTGATTTTATCGAACATG 294435 Query 73009 ACATTTTCCCGGCATCCAT 73027 || ||| ||| ||||| Sbjct 294434 ACGCGCTCCTGGCGTCCAT 294416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671053797536800