Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10130 161 1e-34 seq348 102 1e-16 seq9909 84.2 3e-11 >seq10130 Length=961328 Score = 161 bits (178), Expect = 1e-34 Identities = 373/560 (67%), Gaps = 18/560 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| ||||| ||||| ||||| | | ||||| | | || Sbjct 295189 ACCAACGGCAACTCCAACGGCCTGGTGCCGATGCTGCGGGTCTACAACAACACCGCCCGC 295248 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || |||| ||||| | ||| | ||| |||| || ||| Sbjct 295249 TACGTGGACCAGGGCGGCAACAAGAGGCCCGGCGCCTTCGCCATGTACCTGGAGCCGTGG 295308 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||||| || ||||| | ||| || || ||| | ||| || ||| || Sbjct 295309 CACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAGCGG 295368 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||||||| | || || | || ||| | || || ||||||||| ||| || | Sbjct 295369 GCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAGGCGGGTGGAGAGC 295428 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| ||| ||||| ||| | || ||||| ||| ||| ||| Sbjct 295429 AACCAGG------ACTGGTCCCTGATGTGTCCCAGCGAGTGTCCCGGCCTGGACGAGTGC 295482 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AG 97159 ||||| || ||||| ||| | ||||| |||||| ||||| || ||| || Sbjct 295483 TGGGGGGAGGAGTTCGAGACGCTCTACACAAAGTACGAGGCGGAGGGGCG---GGTGAAG 295539 Query 97160 ACG--AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 | | || | || | | |||||| | |||||| | | | ||| ||||| || Sbjct 295540 AAGGTGGTGAAGGCCCAGCAGCTGTGGTACGCCATCATCGAGTCGCAGACGGAGACCGGC 295599 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 || || ||||| ||||||||||| || || ||||| |||||||| | || ||||| Sbjct 295600 ACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGC 295659 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||||||||| || ||| || ||||| || | || |||| | || ||||||| | Sbjct 295660 ACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGCAAGGACGAGGTG 295719 Query 97338 GCAGTTTGCGTTCTGGCATC 97357 || || ||| ||||| || Sbjct 295720 GCCGTCTGCAACCTGGCCTC 295739 >seq348 Length=361584 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| |||||||||||||| || || || || |||||||| | Sbjct 109565 TGGTGGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCT 109506 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||| |||||| | || || |||||||| ||||| ||| |||||| | || ||| Sbjct 109505 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGAG 109446 Query 125548 ACGAGG 125553 |||||| Sbjct 109445 ACGAGG 109440 >seq9909 Length=2276304 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | | ||| |||||| || || |||||||| ||||||||| Sbjct 1378170 CTCTGGCACGCCATCATCGAGTCGCAGACAGAGACGGGCACGCCGTACATGCTCTACAAG 1378229 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || | |||||| | | |||||||||||||| | ||||||| Sbjct 1378230 GACGCCTGCAACAGGAAGACCAACCAGCAAAATCTGGGCACCATCAAGTCCAGCAATCTG 1378289 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 ||||| ||||| |||||||| Sbjct 1378290 TGCACAGAAATCATAGAGTAC 1378310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740964900216800