Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq297 113 3e-20 >seq297 Length=3848896 Score = 113 bits (124), Expect = 3e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 25774 ATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCT 25833 ||||| | |||||||| || || | |||||||||||| |||||||| ||||| ||||| Sbjct 2862394 ATGTCTTTATACTCTGCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCC 2862335 Query 25834 CCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCC 25893 || || || || | |||||| || |||| ||| | | ||| || ||||| ||| Sbjct 2862334 CCCTCCTCTCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCC 2862275 Query 25894 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 2862274 CAGATCTTCACGCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 2862228 Score = 105 bits (116), Expect = 5e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || || |||||||| ||||| || ||||||||||||||||| || Sbjct 2866599 AGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGC 2866540 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| | ||||||| | | || | |||||| |||||||| || ||||| |||||| Sbjct 2866539 ACCCCCAGGCCCATGT-CGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCA 2866481 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 ||||| ||||| || | || || ||| || || || || || || Sbjct 2866480 GACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAG 2866436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340095399553140