Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9886 91.5 8e-14 seq9943 89.7 3e-13 seq121 87.8 9e-13 seq138 86.0 3e-12 seq9862 84.2 1e-11 seq766 84.2 1e-11 seq194 84.2 1e-11 seq9873 82.4 4e-11 seq849 82.4 4e-11 >seq9886 Length=2686141 Score = 91.5 bits (100), Expect = 8e-14 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||||||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 2405938 AAAAGGAAATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 2405879 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 2405878 TCTAACCAACTGAGCTAACCGGCC 2405855 >seq9943 Length=4897111 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||| ||| ||||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 4837372 AAGAAAACAAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 4837431 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 4837432 GCTCTAACCAACTGAGCTAACCGGCC 4837457 >seq121 Length=614549 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 506598 AAAAT-AACTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 506656 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 506657 TCTAACCAACTGAGCTAACCGGCC 506680 Score = 82.4 bits (90), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||| | |||||||||| |||| || ||||||||||||| |||| Sbjct 507661 AAAAT-AACTTGGCCCGTATGGGGATCGAACCCGCGACGTTGGCGTTATTAGCACCACGC 507719 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 507720 TCTAACCAACTGAGCTAACCGGCC 507743 >seq138 Length=532606 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/92 (80%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||||| | | |||||| | |||||||||| ||||||| |||||||||| Sbjct 468905 ATTAATAAAACA----AGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 468960 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||| |||||||||||||| |||| Sbjct 468961 CACCACGCTCTAACCAACTGAGCTAACCGGCC 468992 >seq9862 Length=3134460 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 426583 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 426642 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 426643 CTGAGCTAACCGGCC 426657 >seq766 Length=108537 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 72439 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 72498 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 72499 CTGAGCTAACCGGCC 72513 >seq194 Length=487182 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 112315 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 112374 Query 11528 CCG 11530 ||| Sbjct 112375 CCG 112377 >seq9873 Length=2792437 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2678516 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2678457 Query 11528 CC 11529 || Sbjct 2678456 CC 2678455 >seq849 Length=88033 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 45336 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 45395 Query 11528 CC 11529 || Sbjct 45396 CC 45397 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261458757113680