Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq216 163 4e-35 seq10075 122 1e-22 seq9916 122 1e-22 >seq216 Length=444560 Score = 163 bits (180), Expect = 4e-35 Identities = 200/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 8704 GACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTC 8763 ||| ||| | |||||||| ||| | | || | |||||||| | || || | Sbjct 85484 GACATTGTTGCAGACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCGAAGCCGGCCGT 85543 Query 8764 TCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCC 8823 || || ||||||||||| |||||||| | |||||||| ||| || |||| ||||| Sbjct 85544 GCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGGGAGCAAATGGGATTTCCCATCAGGCC 85603 Query 8824 TTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACG 8883 ||| ||||| || |||||||||| ||| | || |||| || ||||||||||| | || Sbjct 85604 TTTCAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAGATGGCGTTCGTCCG 85663 Query 8884 GGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGC 8943 |||||| ||||||| | |||| ||| | |||||| || |||| ||| |||||||| | Sbjct 85664 GGGCTTCTCCACCAGCAGGCCGGGGTAGAGCTCCACTGCGTCGACGTCGCCGTAAAGCTC 85723 Query 8944 CCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 | ||| ||| || ||||| ||||||||||| Sbjct 85724 CTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 85756 >seq10075 Length=1152483 Score = 122 bits (134), Expect = 1e-22 Identities = 182/257 (71%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || ||||| |||| | |||||| || || || || ||| ||| |||||| Sbjct 703863 TCACCAATGATGATAAGTCTGGCGGTCTGGAAAAGCTGCTCATCATCCCAGGTTGGATGC 703804 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| | || |||||||||||||| ||||| |||||||| || || |||| Sbjct 703803 TCCCCCTTCAGGATGTCACACACTCTGTTGTGCTCCCTCAGCCAGATGGTGGCATACACG 703744 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 |||| || ||||| || || || |||| ||||||| ||||||||| | | || Sbjct 703743 GTGAGGCCCGGCACGAGCCCGAACACCTCCTGACCGATGGCCAGACGCTGCTCAGCAGGG 703684 Query 9790 A---CTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATT 9846 | ||||| || || | |||||||||| |||| || |||| ||||| ||||| Sbjct 703683 AAACCTTCG---GGGTACACCATGTGCACCGGGACCTCGGACACCGTCGGGGGGTACATC 703627 Query 9847 TCACCGTCAATAATCTG 9863 || || | ||| | ||| Sbjct 703626 TCCCCATTAATCAGCTG 703610 Score = 113 bits (124), Expect = 6e-20 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||||| ||| ||| |||||| || || | ||| | | |||| ||| Sbjct 709858 ACGGACACCACTTGGTGTTCAGACAGACAAGTTTCTTCAGAGTGGAGGTTTTGATGATGT 709799 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 || ||| || || || ||||||||||| |||||||| | |||||| |||| || Sbjct 709798 TGAAGCCCGTCTCGCCCCCAAAGGTGCTGGGCTTCCAGTATTCAGGGGAGTTGATGGGGT 709739 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 || | | |||||||| ||||| || || || |||| ||| | |||||||| || || | Sbjct 709738 TCCCAAGCAGGCCTTTTAGGGAGAAGGGGGCTCCCATCTCCACCATGCTCTCTCCAAATA 709679 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | | | |||| |||| || |||| || || |||| || ||||||| || || |||| Sbjct 709678 TAGAGCTGGGTCGGGTTTTCTCCAGCAGGAGGCCGGGATAAAACTCCAGGGCGTCTATGT 709619 Query 8931 CTCCGTAAAG 8940 |||| || || Sbjct 709618 CTCCATAGAG 709609 >seq9916 Length=2151516 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| |||| ||||| | || ||||| |||||||| |||||||| || || Sbjct 1734425 TTTACGATGTCAAAGCCCACTTTGCCCCCGAACGTGCTGGGCTTCCAGTATTGTGGAGAA 1734484 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| ||| |||||||||||||||||| || ||||||| || | ||||| Sbjct 1734485 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCCCCCATTTCCACCATGCTT 1734544 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || ||||| || || || || | ||| |||| ||| || |||| ||| || || | | Sbjct 1734545 TCTCCGAATATCGCCCCCGGCCGTGTCTTCTCCAACAACAACCCGGGGTAAAATTCGAGA 1734604 Query 8921 GCCTCGATGTCTCCGTAAAG 8940 | |||||||| ||||| || Sbjct 1734605 GTGTCGATGTCACCGTAGAG 1734624 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| |||||||| || |||||||| || || || || || ||| ||||| Sbjct 1739195 TCACCGATGATGATGAGGCGGGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGC 1739254 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| |||||| | || || |||||||| || ||||||||||| | || ||||||| Sbjct 1739255 TCTGCTTTCAGGATGTCACAGACTCTGTTATGCTCCCTGAGCCACAGCGTGGCGTACAAA 1739314 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9772 | | |||||| | || || || |||| ||||||| |||| Sbjct 1739315 CTCAAACCAGGAAGGAGCCCGAACACCTCCTGACCGATGGCCA 1739357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708434640219200