Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq309 178 2e-40 seq3283 172 9e-39 seq1237 172 9e-39 seq446 172 9e-39 seq81 172 9e-39 seq10071 168 1e-37 seq169 163 4e-36 seq313 161 2e-35 seq1997 100 4e-17 seq140 89.7 8e-14 >seq309 Length=361333 Score = 178 bits (196), Expect = 2e-40 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 329173 CGCCAAGCGGCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 329232 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 329233 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGAC 329292 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 329293 CCGCGGTGTGTTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 329352 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || | || || Sbjct 329353 GCACGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 329412 Query 16672 CCG 16674 ||| Sbjct 329413 CCG 329415 >seq3283 Length=9568 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 3406 CGCCAAGCGGCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 3465 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 3466 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCGGGTCTCATCTACGAGGAGAC 3525 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 3526 CCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 3585 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || | || || Sbjct 3586 GCACGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 3645 Query 16672 CCG 16674 ||| Sbjct 3646 CCG 3648 Score = 127 bits (140), Expect = 3e-25 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 7672 CGCCAAGCGGCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 7731 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || |||||||||||| |||| || || |||| || |||| Sbjct 7732 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 7791 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | ||| ||||| ||||||| ||| ||| |||| Sbjct 7792 CCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCC 7829 >seq1237 Length=49935 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || |||||||| || |||||||||||||| ||||| Sbjct 15110 CGCCAAGCGGCACCGTAAAGTCCTCCGTGATAACATTCAGGGAATCACCAAGCCCGCTAT 15169 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || |||||||||||| |||| || || |||| || |||| Sbjct 15170 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 15229 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 15230 TCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 15289 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| |||||| |||||||| | || || || | || | || || Sbjct 15290 GCACGCTAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 15349 Query 16672 CCG 16674 ||| Sbjct 15350 CCG 15352 >seq446 Length=306731 Score = 172 bits (190), Expect = 9e-39 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| || || Sbjct 282800 CGCCAAGCGTCACCGTAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 282859 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| | || || | |||| || |||| Sbjct 282860 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGCATTTCGGGCCTCATCTACGAGGAGAC 282919 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| ||||||| ||| ||| |||| ||| || || ||| |||| Sbjct 282920 CCGCGGTGTGTTGAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACCCCGA 282979 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||||| | ||||| |||||| |||||||| | ||||| || Sbjct 282980 GCACGCTAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTACGC 283024 >seq81 Length=692260 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| || || Sbjct 106458 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCCAT 106399 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || | ||||| ||||| |||||||||||| |||| || | |||| || |||| Sbjct 106398 CCGCCGCTTAGCTCGCCGTGGGGGAGTCAAGCGTATCTCGGGTCTCATCTACGAGGAGAC 106339 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 106338 CCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCGGTCACCTACACCGA 106279 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 106278 GCACGCTAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 106219 Query 16672 CCG 16674 ||| Sbjct 106218 CCG 106216 >seq10071 Length=1187276 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 14837 CGCCAAGCGGCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 14778 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 14777 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGAC 14718 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 14717 CCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGAGACGCCGTCACCTACACCGA 14658 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || | || || Sbjct 14657 GCACGCCAAGAGAAAGACGGTCACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 14598 Query 16672 CCG 16674 ||| Sbjct 14597 CCG 14595 >seq169 Length=494752 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 22767 CGCCAAGCGGCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 22708 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || |||||||||||||| |||| || | |||| ||||||| Sbjct 22707 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGCATCTCGGGCCTCATCTACGAAGAGAC 22648 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 22647 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 22588 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || | || || Sbjct 22587 GCACGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 22528 Query 16672 CCG 16674 ||| Sbjct 22527 CCG 22525 >seq313 Length=421205 Score = 161 bits (178), Expect = 2e-35 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| || || Sbjct 394800 CGCCAAGCGTCACCGTAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 394859 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 394860 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGAC 394919 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| |||| || | | ||| |||| || || || ||| ||||| Sbjct 394920 CCGCGGTGTGCTGAAGTTCTTGCTGGACAACGTGATCCGAGACGCCGTCACCTACACCGA 394979 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 ||||||||| | ||||| |||||| |||||||| | ||||| Sbjct 394980 GCACGCTAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTA 395021 >seq1997 Length=21677 Score = 100 bits (110), Expect = 4e-17 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| |||||||||||||| || || Sbjct 15860 CGCCAAGCGGCACCGCAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 15801 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 ||| ||||||||||| || || ||||||||||| ||||| Sbjct 15800 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGCATCTCT 15761 >seq140 Length=644896 Score = 89.7 bits (98), Expect = 8e-14 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 16516 AGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 ||||||||| |||| || | |||| || |||| || | ||| | |||| ||||||| Sbjct 297202 AGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGTGTGTGGAAGGTCTTCCT 297261 Query 16576 CAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||||| Sbjct 297262 GGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTCAC 297321 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | |||||||| | || || || |||| | || ||||| Sbjct 297322 CGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGGCCG 297360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065892354740