Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10130 201 3e-46 >seq10130 Length=961328 Score = 201 bits (222), Expect = 3e-46 Identities = 565/862 (66%), Gaps = 4/862 (0%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||| || | | || ||||| ||| ||| | || Sbjct 294889 GAGCGGCCGCAGCACATGCTCATGCGCGTGTCGGTGGGGATCCACGGCCGGGACATCGAC 294948 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCCAAC 363566 ||||| || || || || || || || | ||| |||||||||||| |||| || Sbjct 294949 GCCGCCATCGAGACGTACAACCTGCTGTCGGAGAAGTGG-TTCACGCACGCCTCGCCGAC 295007 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || || || || ||| |||| ||||| || || ||||| Sbjct 295008 GCTCTTCAACGCCGGCACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAA 295067 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| ||||||||| |||| ||||| || ||| | || || || || |||||| Sbjct 295068 GGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTC 295127 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGG 363746 || ||||| || || || || | | | || | | ||| ||||| ||| Sbjct 295128 GGCCGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCTCGACGGGCAGCTACATCGCCGG 295187 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 ||| || |||| || || ||||| || ||||| || || | |||| || || | Sbjct 295188 CACCAACGGCAACTCCAACGGCCTGGTGCCGATGCTGCGGGTCTACAACAACACCGCCCG 295247 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 ||||| |||||||| || ||| | || || || || ||||| || ||||| Sbjct 295248 CTACGTGGACCAGGGCGGCAACAAGAGGCCCGGCGCCTTCGCCATGTACCTGGAGCCGTG 295307 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || ||| | || || || || ||||| ||| |||||||| || ||||| ||| Sbjct 295308 GCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAGCG 295367 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-G 363985 || | || || ||||| | || ||| | | |||| || |||| ||| |||||| | Sbjct 295368 GGCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAGGCGGGTGGAGAG 295427 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 || | || | |||| || | || || ||| ||||| || || ||| |||| Sbjct 295428 CAACCAGGACT-GGTCCCTGATGTGTCCCAGCGAGTGTCCCGGCCTGGACGAGTGCTGGG 295486 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 | || || | | | || ||| |||||| || ||||||| || ||| Sbjct 295487 GGGAGGAGTTCGAGACGCTCTACACAAAGTACGAGGCGGAGGGGCGGGTGAAGAAGGTGG 295546 Query 364106 TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCT 364165 | || ||| |||| |||| |||||||| || ||||||| ||||| || || |||| Sbjct 295547 TGAAGGCCCAGCAGCTGTGGTACGCCATCATCGAGTCGCAGACGGAGACCGGCACGCCCT 295606 Query 364166 ATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTC 364225 | ||| | ||||| || | |||||||||||| |||||||||| |||| || || || Sbjct 295607 ACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCA 295666 Query 364226 AGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTAT 364285 || |||||||| || |||||| | | || | |||| |||||| ||||| | Sbjct 295667 AGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGCAAGGACGAGGTGGCCGTCT 295726 Query 364286 GTAACCTTGCGTCGATCGCGCT 364307 | ||||| || || ||||| || Sbjct 295727 GCAACCTGGCCTCCATCGCCCT 295748 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || ||||||||||| || || || || |||||||| || |||||||||| | |||| | Sbjct 296194 GCCCCCATGCCCACCGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCC 296253 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | |||||||| || ||||| || || | | | || || Sbjct 296254 TACACCAGCAACATCTACACCCGCCGGGTCCTCTCCGGCGAGTTCCAGATCGTCAACCCT 296313 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 |||| ||||||| || | || |||||||||||| | || |||||||||| | | Sbjct 296314 CACCTCCTCAAGGACCTGACGGAGCGCGGGCTGTGGAGCGAGGACATGAAGAACAAGCTG 296373 Query 364930 ATCGCC 364935 |||||| Sbjct 296374 ATCGCC 296379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303183601960760