Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq10130 349 3e-91 seq9909 118 1e-21 seq483 89.7 5e-13 seq348 84.2 2e-11 >seq10130 Length=961328 Score = 349 bits (386), Expect = 3e-91 Identities = 998/1510 (66%), Gaps = 46/1510 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||| |||||||||| | || || || || | ||| ||| ||| Sbjct 296309 TTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCC 296250 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | |||||||||||| |||| | Sbjct 296249 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGGGCCAGC 296190 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||||||| ||| | ||||| ||| ||| ||||| Sbjct 296189 AGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 296130 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || || || ||||||||||||||||| | | ||| |||| |||| | Sbjct 296129 AGGTCGGTGGGGGTCTTCTCCCACATGTCGTACTGGAGCACCCCCCGGCTGACGGGCGAG 296070 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCG--AGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| |||| || | | || |||||||| || |||||||| | Sbjct 296069 CCCTCGTACGTCTCGTAGGGGCCC--AGCTCCGCCGCCAGCTCGCAGCTGGCCTCCAGCG 296012 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| || || |||||||||| ||| || |||||||| Sbjct 296011 CGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTCTCGA 295952 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| ||||| ||| | || || ||||| || ||||| | || | ||||||||||| Sbjct 295951 ACGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGGCC 295892 Query 145476 GATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 | || | ||||| ||| ||||| ||| | ||| | | ||| ||||| Sbjct 295891 GGTGGCGCTTGTTGGAGCGCTCGGCCTCGGGGACCGGGTAGTA----GTTTATC-TCGAT 295837 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAA-CTTTTCAAAGTCAA 145589 | || |||| ||| ||| | ||||| || | | || || | ||| | ||||| | Sbjct 295836 GACCTTGTTCAGGTTCTTCACGATCACCTTGGTGACG-GCGGCCAGCTTCTTGAAGTCGA 295778 Query 145590 A---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAA 145646 | ||| |||| ||| ||| | |||| |||||| || |||| || || | Sbjct 295777 AGGTCCG---CTCGGGCGTGACGT-ACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGA 295724 Query 145647 CTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGA 145706 | ||| ||| || | | || | | || | ||||| ||| | ||||| || |||| Sbjct 295723 CGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGA 295664 Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766 |||| ||||| || ||||| || || || | |||||| |||||||||||||||||||| | Sbjct 295663 TGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGG 295604 Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCAC 145824 | ||| |||||| ||||| ||| | ||| || || || | ||| || ||| Sbjct 295603 GCGTGCCGGTCTCCGTCTGCGACTCGATGATGG--CGTACCACAGCTGCTGGGCCTTCAC 295546 Query 145825 CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 | || || || ||||| | ||||| || |||||||| ||| ||| | || Sbjct 295545 CACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAACTCCTCCCC 295486 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||| ||| |||||||||||||| | ||||||||||||| ||||| | |||| Sbjct 295485 CCAGCACTCGTCCAGGCCGGGACACTCGCTGGGACACATCAGGGACCAGTCCTGGTTGCT 295426 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCT 146002 | || ||| ||| |||| || || | |||||| |||| | | ||| | || | Sbjct 295425 CTCCACCCGCCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCG 295366 Query 146003 TTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGC 146062 ||| ||||| ||| |||| ||||| | || | | | ||| |||| Sbjct 295365 CTGC--TCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGC 295308 Query 146063 CACGGTTCAATATAGACGGCGAGGGCTCCTTT--TCGT-TTGCCACCCTGGTCCACGTGA 146119 ||||| || | || | ||||| ||| || || | ||||| ||||||||||||| Sbjct 295307 CACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCACGTAG 295248 Query 146120 CGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA 146179 || | ||||||| |||| |||| ||| ||| | | |||| ||| |||||| || Sbjct 295247 CGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTG 295188 Query 146180 GAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCG 146239 | || | |||| ||||| | ||| || |||||||| |||||| | Sbjct 295187 CCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCTCACCGCCACGCCGATGCCGCCGGCC 295128 Query 146240 TACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297 ||||||| || |||||| | |||||| ||||||||||| || ||||| ||| | Sbjct 295127 GACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCC 295068 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGC--GTCCCCGCCGAGAA 146355 ||| ||| | ||||| ||||| | ||| ||||| | ||| || || || ||| Sbjct 295067 TTC--ATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGC--CGGTTGGTGCCGGCGTTGAA 295012 Query 146356 CAACGTCGGGCTCGCGTGCGTAAAC-ATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414 | |||||| |||||||| ||| | || || | || || ||||| ||||| | Sbjct 295011 GAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGA-CAGCAGGTTGTACGTCTCGATGG 294953 Query 146415 CGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCC 146474 || | | ||||| ||| || || |||| | ||||||||||||||||| || |||| Sbjct 294952 CGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGTGCTGCGGCC 294893 Query 146475 GCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGA 146534 |||| ||||| | || ||||| | || ||| | ||||||||| ||| | |||| Sbjct 294892 GCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGA 294833 Query 146535 AAAATTTGTA 146544 | || ||||| Sbjct 294832 AGAAGTTGTA 294823 >seq9909 Length=2276304 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | || ||| || | ||||| |||||| | |||||||| |||||||||||||| | Sbjct 1378311 TGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 1378252 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | | ||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| Sbjct 1378251 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGCG 1378192 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 1378191 ACTCGATGAT 1378182 >seq483 Length=217099 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 215561 GCCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 215620 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 215621 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 215680 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || || | | ||| | || ||| | | ||| | Sbjct 215681 GATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCAC 215740 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 215741 CTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 215789 >seq348 Length=361584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 46153 GAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCC 46212 |||||| |||||||||| || ||||||||| |||| || || ||| || |||||| Sbjct 109572 GAGCGTGTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCCGCC 109513 Query 46213 ATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGAT 46271 ||||| | | || | | ||| | |||||||||||||| || ||||||||||| || Sbjct 109512 ATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCAT 109454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471952736371200