Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_008030.1 Length=190054 Score E Sequences producing significant alignments: (Bits) Value seq9865 87.8 2e-12 >seq9865 Length=3154023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/184 (73%), Gaps = 14/184 (8%) Strand=Plus/Plus Query 169319 GCGCAAGCCCATCATGGGCGACAAGTTCACGAGCCG-CACGAGCCAGAAGGGGA----CG 169373 |||||| |||| ||| |||||||||||| | ||||| |||| |||||||||| | Sbjct 73490 GCGCAACCCCACCATCGGCGACAAGTTCGCCAGCCGCCACG-GCCAGAAGGGCATCCTGA 73548 Query 169374 GTCGCCTACATCGAGGAC-GAGAAGGACCTGCCGTACGACGAGGACGGCATCTCGCCGGA 169432 | ||||| | || | | | ||||| |||| | | |||| |||||| ||||||| Sbjct 73549 GCCGCCT-----GTGGCCGGCGGAGGACATGCCCTTCACCGAGAGCGGCATGGCGCCGGA 73603 Query 169433 CATCATCGTCAACTC-CACGTCCATCTACTCGCGCAAGACCATCTCCATGCTTATCGAGA 169491 |||| || ||||| | |||| | || || |||| ||||||| |||||| ||||||| Sbjct 73604 CATCCTCTTCAACCCGCACG-GCTTCCCGTCCCGCATGACCATCGGCATGCTCATCGAGA 73662 Query 169492 TCAT 169495 ||| Sbjct 73663 GCAT 73666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607967426299200