Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq9955 111 1e-19 seq483 109 4e-19 >seq9955 Length=1786201 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| | || ||| | | || Sbjct 3858 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 3917 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 3918 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3977 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||||| ||||||| | || |||||||| Sbjct 3978 TGGATCTTTGC--CTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGG 4035 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || ||||| || |||||||| Sbjct 4036 TCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 >seq483 Length=217099 Score = 109 bits (120), Expect = 4e-19 Identities = 161/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| | || ||| | | || Sbjct 215577 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 215636 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 215637 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 215696 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | ||||||| |||||| || | |||||||| Sbjct 215697 TGGATCTTGGCT--TTCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGG 215754 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT-TTTGTAGCCT 16945 | || || || || || |||||||| |||||||| |||| | ||| Sbjct 215755 TCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGCAACCT 215799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405037741238200