Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2430 118 7e-22 seq785 116 2e-21 seq10026 104 2e-17 seq552 104 2e-17 seq1181 95.1 8e-15 seq3694 89.7 3e-13 >seq2430 Length=17840 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 6486 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGCTAGGGACAGTGGGAATCTCGT 6545 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 6546 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 6580 >seq785 Length=139575 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 88080 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAATGGGAATCTCGT 88139 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||||||||||||||||||||||||| Sbjct 88140 TCATCCATTCATGCGCGTCACTAATTAGATGACG 88173 >seq10026 Length=1441507 Score = 104 bits (114), Expect = 2e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || || ||||| ||||||||| |||||||| Sbjct 973184 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCGCAGACCCAGTTTGATACCAAAAACG 973125 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| || ||||| || | | |||| ||||||| | || || || | Sbjct 973124 ATCGTTACATCGTCAATGGATCCCACGAGGCGAACAAGTTGCAGGATATGCTCGATGGGT 973065 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 973064 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGACCT 973013 >seq552 Length=225834 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||| ||||||||| ||| || |||| || |||||||| Sbjct 30061 AAGCCCGTTCCCTTGGCTGGGGTTTCGCTGGATGAGAGTTAGGTACAGTGGGAATCTCGT 30002 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 30001 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 29967 >seq1181 Length=47698 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 6973 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 7032 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 7033 GCCGGTATTTAGCCTTA 7049 >seq3694 Length=9729 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| ||| Sbjct 4753 CTCTCTTTTCAAAGTCCTTTTCAACTTTCCCTCGCGGTACTTCTTCGCTATCGGTGTCGT 4812 Query 20007 GGTAATATTTAG 20018 || ||||| || Sbjct 4813 CGTTATATTGAG 4824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334905643519580