Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10130 284 2e-71 >seq10130 Length=961328 Score = 284 bits (314), Expect = 2e-71 Identities = 826/1261 (66%), Gaps = 8/1261 (1%) Strand=Plus/Minus Query 62803 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 62862 ||| ||||| || || || ||||||||||| || | || || || || ||||| ||| Sbjct 295689 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTT 295630 Query 62863 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 62922 || || ||||| || || ||| | || || || || || |||| || || || || || Sbjct 295629 GCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGC 295570 Query 62923 TTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 62981 | ||| | | || | ||||| | | || | | || ||||| || Sbjct 295569 GTACCACAGCTGCTGG-GCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTG 295511 Query 62982 TATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040 | || | ||| |||||||| || ||||| | |||||| || ||||| || ||| Sbjct 295510 TGTAGAG-CGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGA 295452 Query 63041 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63100 ||||||| ||||| || || || ||| || |||| || || || || ||||| Sbjct 295451 CACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCAC 295392 Query 63101 AGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63159 || || || || || || |||| | || ||||| || || || ||||| || || || Sbjct 295391 AG-GCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTC 295333 Query 63160 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 ||||| | | | || | |||||||| |||| ||| ||||| | | || |||| Sbjct 295332 CAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCT 295273 Query 63220 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63279 ||||| || ||||| || | ||| | |||||||| || || || | || ||| || | Sbjct 295272 CTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCAC 295213 Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339 | || ||||| | || ||||| || | ||| ||||| || | | || || || Sbjct 295212 CAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCT 295153 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 | | | || || || || ||| || ||||| | ||||| | || | ||| || Sbjct 295152 CACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTC 295093 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 ||||||||||| || || || ||| ||||| || || || ||||| |||| || | Sbjct 295092 GTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGG 295033 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519 || | || || || || || | || || || ||||| || ||||| || || || || Sbjct 295032 CCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAG 294973 Query 63520 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63579 || ||||||||||| || || | ||| || |||| || || || || | || || Sbjct 294972 CAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCG 294913 Query 63580 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63639 ||| | ||||||||| || | || | | ||| ||| || |||| || |||||| Sbjct 294912 CATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCG 294853 Query 63640 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63699 |||| || || || || || ||||||| || ||||| || ||| | || || | || Sbjct 294852 CTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGGA 294793 Query 63700 GTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAA 63758 |||||| ||||| | | || | |||| || | ||| || | || || Sbjct 294792 GTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCCAGCGT-CTCCTTGGAGACCATGGGGG 294734 Query 63759 AATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 63818 | || || || || ||||| |||||| | | ||||||||||| || || || | Sbjct 294733 AGTGGCGGCCGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACA 294674 Query 63819 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAAT 63878 || || || || ||||| | || || ||||| || || ||||| || ||||| || | Sbjct 294673 CCTTCTTGGTCTCCTTGTGGATGTTGGAGACGGCGATCCTGGCGGCGAGGATGGCGTAGT 294614 Query 63879 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 63938 | || || | || || ||||| || || || || || || ||||||| || || | Sbjct 294613 CGGGGTGCTTGGTGGTGAGGGTGGCCGCGATCTCTGCGGCGAGCGTGTCCAGCTCCACGG 294554 Query 63939 TTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATAT 63998 | || || || | || | || ||||| |||||||| | || | | || || | Sbjct 294553 TGGTGACGCCGCTGTACAGGCCCTGGATCACCTTCATGGTGATCTGCGTCGGGTCCACGA 294494 Query 63999 GATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGA 64058 || | ||| | ||| || || | || || || || ||||||||||| ||||||| Sbjct 294493 AGTCCGCGTTCAGGCCGTAGCACAGCTTCTGTATGCGGGACGTGATTTTATCGAACATGA 294434 Query 64059 C 64059 | Sbjct 294433 C 294433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633551370328000