Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9955 114 1e-20 seq483 102 7e-17 seq10130 96.9 3e-15 >seq9955 Length=1786201 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || |||| || || ||||| ||| | Sbjct 4297 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4238 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || ||||||||||| || || || || || Sbjct 4237 GACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 4178 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | || ||| ||||||| | || || |||| | Sbjct 4177 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACACC 4118 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 4117 ATCCAGAAAGAATCCACC 4100 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || | ||||| ||| Sbjct 4070 GATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGTAGGTGGAGCCCAG 4011 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || || |||| ||| || || ||||||||||| || || || || || Sbjct 4010 CGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3951 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||||||| | || ||| ||||||| | || || ||||| Sbjct 3950 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 3891 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 3890 CATCCAGAAGGAGTCCACC 3872 >seq483 Length=217099 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||| ||| ||||| || ||||| || || | || || || || |||| || || |||| Sbjct 215796 TTGCAAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTGG 215737 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | ||| ||| | || || | ||| || || || ||||||||||| || || | Sbjct 215736 AGCCTAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCC 215677 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || || | || || ||||| ||||| ||| | || ||| ||||||| | || | Sbjct 215676 CTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTG 215617 Query 22391 ATTACAACATTCAAAAAGAATCCACC 22416 | |||||||| || || || |||||| Sbjct 215616 ACTACAACATCCAGAAGGAGTCCACC 215591 >seq10130 Length=961328 Score = 96.9 bits (106), Expect = 3e-15 Identities = 250/372 (67%), Gaps = 13/372 (3%) Strand=Plus/Minus Query 130025 TCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTCTATCCTC 130082 |||| |||| ||||| | ||||||| |||| || | || | || | | || |||| Sbjct 295414 TCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGCT--CCTC 295357 Query 130083 GGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAAC 130142 ||| |||| ||||| || ||||| ||| | | |||| ||||||||| || | Sbjct 295356 CTTGCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAG 295297 Query 130143 ATAAATTGCCATTGCGCC---CTTCCGTTTGCCCCCTTGGTCAACGTGGCGCACGGCATT 130199 || || || | ||||| | || ||||| || ||||| |||| ||| ||| || Sbjct 295296 GTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTT 295237 Query 130200 GTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAA 130259 ||||||||| |||| ||| | | ||| ||||||| ||||||| |||| | ||| | Sbjct 295236 GTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTA 295177 Query 130260 ACTGCC--ACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGAT 130317 ||||| |||| | || | | ||| | || ||||||||| | | || || Sbjct 295176 GCTGCCCGTCGAG-CGGATGCAGCTCACCGC-CACGCCGATGCCGCCGGCCGACTTGGAG 295119 Query 130318 ATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTT 130376 || | ||||| | || | ||||| || || ||||| |||| ||||| || || ||| Sbjct 295118 ATGAGGGCGCACT-GCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGC 295060 Query 130377 TAGGAGGAAACA 130388 || ||||| || Sbjct 295059 CAGCAGGAAGCA 295048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419675924871700