Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9955 168 1e-36 seq483 158 2e-33 seq10130 145 1e-29 seq348 84.2 4e-11 >seq9955 Length=1786201 Score = 168 bits (186), Expect = 1e-36 Identities = 165/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | |||||||| Sbjct 3861 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 3920 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || || || ||||| || || ||||| |||||||| || Sbjct 3921 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3980 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| |||||||||||| ||| | || || | || ||||||||| || Sbjct 3981 ATCTTTGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCCACCTACAGGGTGATGGTCTT 4039 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| |||||||| Sbjct 4040 CCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 Score = 138 bits (152), Expect = 2e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| | | || ||||| ||||| |||||| | || || || || || | |||||||| Sbjct 4089 ACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCC 4148 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || || || ||||| || || ||||| |||||||| || Sbjct 4149 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 4208 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431 ||||| || || || ||| |||||||| |||| || || |||| ||||||||| || Sbjct 4209 ATCTTAGCTTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTT 4267 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| || || ||||| Sbjct 4268 GCCAGTGAGGGTCTTGACAAAGATTTGCAT 4297 >seq483 Length=217099 Score = 158 bits (174), Expect = 2e-33 Identities = 185/246 (75%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 68217 ATGATGTGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTT 68276 |||| ||||||| | | || || | || || | |||| ||| || |||||||| || Sbjct 215545 ATGAAGTGATTT-ACTGGCCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTC 215603 Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 |||||||| || || || || || | |||||||| | |||||| || || || || || Sbjct 215604 TGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGC 215663 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| || || ||||| |||||||| || ||||| || || || ||||||| Sbjct 215664 CTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATG 215723 Query 68397 GTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 ||||| ||| | || || || | ||||||||| || || |||||||||||||| || || Sbjct 215724 GTGTC-GCTAGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGAT 215782 Query 68456 CTGCAT 68461 |||||| Sbjct 215783 CTGCAT 215788 >seq10130 Length=961328 Score = 145 bits (160), Expect = 1e-29 Identities = 816/1290 (63%), Gaps = 35/1290 (3%) Strand=Plus/Minus Query 31038 TGGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGA 31097 |||||||| || |||||| || | || |||||||||| ||||| |||| || || Sbjct 296396 TGGATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATGTCCTCGCTCCACAGCCCGCGC 296337 Query 31098 GCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGG 31157 | | ||||| | ||||| |||||| | ||||||| || | ||| |||| Sbjct 296336 TCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCGG 296277 Query 31158 CGGCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTCTACGGACCCGCAGATTTGCGCG 31217 ||| |||| | || ||| | ||| || | ||| | || ||| || ||| Sbjct 296276 CGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCG 296217 Query 31218 GTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCTTCTTGACGCGC 31277 ||||| ||||||||||| | || ||| ||||| || || | | | || | Sbjct 296216 GTGGAGGCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATC 296157 Query 31278 T----CTTCGAGGGTCTTCCAGTCA---AGGCGAGTTACCGGCTCGGTTC-CCCAGAGGT 31329 | |||| || ||||||||| ||| || || || ||| |||| | || Sbjct 296156 TTCTCCTTC-AGCAGCTTCCAGTCCCACAGGTCGGTGG--GGGTC--TTCTCCCACATGT 296102 Query 31330 GATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCT 31389 ||||| | ||| || || |||| || ||||| | || | ||| || ||| Sbjct 296101 CGTACTGGAGCACCCCCCGGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCT 296042 Query 31390 CTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCC 31449 | |||| || ||||| |||||||| ||| || ||| || |||| ||||| | Sbjct 296041 CCGCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGA 295982 Query 31450 GGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCT 31509 |||||| || ||| || | || || || ||||| | || ||| |||| Sbjct 295981 CGTTGAGCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGG 295922 Query 31510 GAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGG 31569 ||||||||||| || | || || || || ||||| |||| || ||||||| Sbjct 295921 CCAGACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAGCGCTCGGCCTCGG 295862 Query 31570 GAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCCAGAATCTTCACGT 31629 | | | |||| | | | || ||| ||||| |||||||| | | | ||| || Sbjct 295861 GGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTG--GT 295804 Query 31630 GCTTGCGA--AGGTCCTCAAAGTCGTAGGCAC---CGTTCTTGACGTAGTTCTGGAGGAC 31684 | ||| || | || |||||| ||| | || | ||||||| | | |||| | Sbjct 295803 GACGGCGGCCAGCTTCTTGAAGTCGAAGGTCCGCTCGGGCGTGACGTACATGTTGAGGGC 295744 Query 31685 GATGCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGC 31744 |||| | | | || || ||| |||||| | ||| | || || | ||||| Sbjct 295743 GATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGT 295684 Query 31745 ACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGC 31803 || || ||||||| | |||||||||| || ||| || |||| ||| || || Sbjct 295683 GCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGC 295624 Query 31804 TGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCC 31863 |||||||| ||||| ||| ||| |||| ||||| |||||| ||| || || | || Sbjct 295623 -GTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACC 295565 Query 31864 AGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACA 31923 | | | | || || || || |||||| | |||||||| | |||||| || | Sbjct 295564 ACAGCTGCTGGGCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGA 295505 Query 31924 GGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGA 31983 | |||| |||||| || || ||| || ||||||||||| |||| | | Sbjct 295504 GCGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGACACATCA 295445 Query 31984 GCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGT 32043 | ||||| | | | ||| || ||| |||||||||||||| | ||||| ||| Sbjct 295444 GGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAGGCCGT 295385 Query 32044 AAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTC-GGAGCAGCAGGAAG 32102 | || || | |||||| || || ||||| ||| ||| | || ||| ||||||| Sbjct 295384 AGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTT-CTTCTTCAGCTCCAGGAAG 295326 Query 32103 TCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCC------CTTGCGG 32156 || | | |||| ||| ||||| ||||||| |||||| | || |||| | Sbjct 295325 TCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTTG 295266 Query 32157 CGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATG 32216 || ||||||| |||| | || ||| ||| ||| |||||| || || | | Sbjct 295265 ---CCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCAGG 295209 Query 32217 CCATCAGACTCGCCATTGGTCCCCTGGATCTTGGAACCACGGC-CGCGAATGTCGCTCAG 32275 || | || | ||| ||||| || ||| | | || || | ||| ||| ||||| Sbjct 295208 CCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCC-CGTCGAGCGGATGCAGCTCAC 295150 Query 32276 GTGCAGGCCGATGCCGCCACCAAACTTGGA 32305 || |||||||||||| | ||||||| Sbjct 295149 CGCCACGCCGATGCCGCCGGCCGACTTGGA 295120 >seq348 Length=361584 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| |||||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 90825 ACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 90766 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 90765 TACTGGATGGGGAA 90752 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| || || ||| |||||||||| ||| ||||| Sbjct 94199 CATGACGCCCATCCTCTGGTACTCTCCCACTCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 94140 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 94139 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 94104 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| || || ||| |||||||||| ||| ||||| Sbjct 108663 CATGACGCCCATCCTCTGGTACTCTCCCACTCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 108722 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 108723 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 108758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921505123549600