Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10130 762 0.0 seq348 127 4e-24 seq9909 120 6e-22 seq51 96.9 7e-15 >seq10130 Length=961328 Score = 762 bits (844), Expect = 0.0 Identities = 1149/1616 (71%), Gaps = 52/1616 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 ||||| |||| | |||| |||| | | ||||| ||| ||||||| || ||||||| Sbjct 296390 GAGCCGTTGTTGGCGATCAGCTTGTTCTTCATGTCCTCGCTCCACAGCCC---GCGCTCC 296334 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| ||| || | ||| ||||| || || || || ||||| Sbjct 296333 GTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGG 296274 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 296273 GTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 296214 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || |||||||| | || |||||| ||||||||||||||||||| ||| Sbjct 296213 GAGGCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTC 296154 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | | | | || || | | |||||||| Sbjct 296153 TCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGGGTCT----TCT-----CCCACATG 296103 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| |||| |||| ||||||||| ||||||||| ||| |||||| || | Sbjct 296102 TCGTACTGGAGCACCCCCCGGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCA-G 296044 Query 244367 CGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | | | ||||||| ||||| | || || ||||||| ||||||||||||||||||| Sbjct 296043 CTCCGCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTG 295984 Query 244426 CTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGT 244484 ||| | | || | |||| | ||| ||| ||| || ||||| |||||| ||| Sbjct 295983 GACGTTGA-GCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGT 295925 Query 244485 CGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTT 244544 ||||||| ||||| ||||||||||||||||| | ||| ||||||||||||||| ||| | Sbjct 295924 CGGCCAGACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAGCGCTCGGCCT 295865 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGA 244604 |||| || ||||| |||| ||||| |||||||| ||||| ||||| | Sbjct 295864 CGGGGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGG 295805 Query 244605 CGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCA 244664 |||| |||||||| || |||||| | || | ||||| || | Sbjct 295804 TGACGGCGGCCAGCTTCTTGAAGTCGAAG--GTCCG----CTCGGGCGTG---------A 295760 Query 244665 CAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGT 244724 | || ||||||||||| | |||||||||||||||||||||||| ||| | ||||| Sbjct 295759 CGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGA 295700 Query 244725 ACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGG 244784 ||| || | ||||||||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 295699 ACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGC 295640 Query 244785 ACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGA 244844 |||| ||||||||||||||||||||||||| ||||| |||||||| ||| | Sbjct 295639 TCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACT 295580 Query 244845 CGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCT 244904 ||| || | || ||| || | | ||||| ||| | | || ||||| |||| Sbjct 295579 CGATGATGGCGTACCACAGCTGCTGGGCCTTCACCACCTTCTTCACCCGCCCCTCCGCCT 295520 Query 244905 CGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACG 244964 |||| ||||| || | ||||||||| |||||| |||||| |||||||| ||| Sbjct 295519 CGTACTTTGTGTAGAGCGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACAC- 295461 Query 244965 ACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 ||| ||| ||||| || ||| || | | || |||| | |||||| |||||| Sbjct 295460 TCGCTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCG 295401 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 |||||||| ||| | | |||||||||||||| || |||||| ||| ||| ||||||||| Sbjct 295400 GGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTC 295341 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 ||||||||| ||||| || ||||||| |||||| ||||||| ||| | |||| |||| Sbjct 295340 TTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCG 295281 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCG 245199 ||||||| ||||||||| |||||||||| | | || ||| |||| ||| || Sbjct 295280 CCGGGCCTCTTGTTGCCGCCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGTAGACCCG 295225 Query 245200 CAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCC 245259 ||| | ||||| | |||||| |||| |||||||||||| ||||||| |||| | Sbjct 295224 CAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGA 295165 Query 245260 CCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 | || | ||| | | || ||| | |||||||| |||||||||||||||||| Sbjct 295164 GCGGATGCAGCTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTG 295105 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||||| ||||| |||||||| |||||||| ||||||| ||||| |||||| Sbjct 295104 CTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCT 295045 Query 245380 GGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||||||||| ||| | | ||| | |||||| || || || |||||| || || | Sbjct 295044 GGACAGCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCA 294985 Query 245440 GCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCT 245498 | || ||| || | |||||||| || |||||||||| |||||||||| Sbjct 294984 -CTTCTCCGACAGCAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCC 294926 Query 245499 GCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGT--CCCT 245555 || | ||| | |||||| ||||||| ||| |||| | || || || || Sbjct 294925 CCACCG-ACACGCGCATGAGCATGTGCTGCGGCCGCTCG--GCCACCTTCCCGTTGATCT 294869 Query 245556 TGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 | |||| |||||||||||| || |||||||| || ||| | |||| |||||| Sbjct 294868 TCAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCG 294813 >seq348 Length=361584 Score = 127 bits (140), Expect = 4e-24 Identities = 106/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| ||||||| ||||||||||||||||| ||| | |||||| ||||||||| Sbjct 109565 TGGTGGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCT 109506 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||| ||||| ||||||||||| Sbjct 109505 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGA 109447 Query 42825 GACGAGG 42831 ||||||| Sbjct 109446 GACGAGG 109440 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 94109 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 94168 Query 43130 CGTCGCCGACTACCAG 43145 || | || |||||| Sbjct 94169 AGTGGGAGAGTACCAG 94184 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 108753 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 108694 Query 43130 CGTCGCCGACTACCAG 43145 || | || |||||| Sbjct 108693 AGTGGGAGAGTACCAG 108678 >seq9909 Length=2276304 Score = 120 bits (132), Expect = 6e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | |||||||||||| |||||||| ||| | ||| ||||| |||| ||||||| Sbjct 1377852 ACCCGTTTCATGAAGAGGTCTGGGATCCACAGGCCAAAGAACAGGTCTCTGGCCCTCTGC 1377793 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || || ||||||||| ||||||||||||| ||||| ||||| ||||||| ||| Sbjct 1377792 TCCTCTTTACCGGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCGTGCCACGGC 1377733 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||| | || | ||| || || Sbjct 1377732 TCCAGGTACATGGCAAAGGCCCCTGG 1377707 Score = 104 bits (114), Expect = 4e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCA 244376 || |||||||||||| || ||| |||||||| ||||| ||| | | | |||| Sbjct 1381025 CACCCCCTTGCTGACAGGAGAGCCGGCGTAGGTCTCATAGGGGCCGA-GTTCAGCCGCCA 1380967 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| | || ||||| || | |||||||||||||||||| |||| | || Sbjct 1380966 GCTCACAGCTGGCCTCCAGGGCAGCATGGTAGATGGTCTCGAAGATGTGGATGTTGA-GT 1380908 Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 | |||||| || || ||| || ||| | |||||| |||| ||||| ||| Sbjct 1380907 AACTGGGCCTCTGGGCTTTCAAACGGGTAGCGCATGAGGATGAAGGCGTCAGCCAGGCCC 1380848 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 ||||| ||||| || || || ||||| ||||||||||| Sbjct 1380847 TGCACACCGATCCCAATCGGCCTGTGGCGCTTGTTGGA 1380810 Score = 100 bits (110), Expect = 5e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| | || || ||||| || || ||| |||||||||||||||| | || || Sbjct 1378312 GTGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGG 1378253 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 |||| ||| ||||||||||||||||||||||||| | ||| || ||||| ||| Sbjct 1378252 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGC 1378193 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | ||| || | || |||||| | | |||| | ||| | | ||| ||||||| Sbjct 1378192 GACTCGATGATGGCGTGCCAGAGCTGCTGAGCCCTCACCACGCGCCTGGCCCTGCCCTCC 1378133 Query 244901 GCCTCGTAGC 244910 |||||||| Sbjct 1378132 TGCTCGTAGC 1378123 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||| || || ||||| | ||| ||||| |||||| || | ||| ||| Sbjct 1381430 ACCTGAAACTCCCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTATGCCTCAATG 1381371 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || ||||| || | || ||||| Sbjct 1381370 GACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATTGGGGCCAAAAGCAGG 1381311 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||||||||||||||| Sbjct 1381310 CTGTTCCTCACGCCGTGCCT 1381291 >seq51 Length=752366 Score = 96.9 bits (106), Expect = 7e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | || || ||||| ||||||||||| ||| | || || Sbjct 77690 GGGGAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGGATCTTCTTCTCTGGCTCATTTGCT 77631 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||||| ||| ||| ||| || ||||| || || |||| ||| || ||||| Sbjct 77630 GCCATCTACTGGCTGAAGAAGAGAGGCCTC-ATGCCGGGCCTTACCTACTCCAATGAACT 77572 Query 42815 CATCAGCAGGGACGAGG 42831 ||| |||||||| |||| Sbjct 77571 CATTAGCAGGGATGAGG 77555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944219032836800