Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq297 96.9 3e-15 >seq297 Length=3848896 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || |||| || || | ||| || || | |||| ||||||||| ||||||||||| Sbjct 2866599 AGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGC 2866540 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| |||||||| | || | ||| |||||||||||||| ||||| ||||| Sbjct 2866539 ACCCCCAGGCCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 2866480 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || || || || || | ||| ||||| || || ||||| Sbjct 2866479 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCAT 2866439 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 20528 TACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTT 20587 ||| | || |||||||||||||||||||| ||||| |||||||||| ||||||||| | Sbjct 2862385 TACTCTGCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCCCCCTCCTCT 2862326 Query 20588 CTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTG 20647 || | | | ||| | | ||||||| | | ||| || || ||||| ||||| Sbjct 2862325 CTCTCTGTGAAGCCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCCCAGATCTTC 2862266 Query 20648 ACTCCTGTTCT-TGAAAGCTCCCTGG 20672 || ||| |||| ||| |||||| ||| Sbjct 2862265 ACGCCT-TTCTCTGACAGCTCCTTGG 2862241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441316635311200