Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1748 87.8 1e-12 seq785 87.8 1e-12 >seq1748 Length=24626 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAACC 114391 ||||||| ||||||||||| |||| |||||||||||||| | | | |||| |||||||| Sbjct 21241 ATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGTGGAGCGATCAAAGGAACC 21300 Query 114392 AAAACTGATATATTGAGCCATTCG 114415 | ||||||| || ||||||||||| Sbjct 21301 ATAACTGATTTAATGAGCCATTCG 21324 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAACC 115588 ||||||| ||||||||||| |||| |||||||||||||| | | | |||| |||||||| Sbjct 21241 ATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGTGGAGCGATCAAAGGAACC 21300 Query 115589 AAAACTGATATATTGAGCCATTCG 115612 | ||||||| || ||||||||||| Sbjct 21301 ATAACTGATTTAATGAGCCATTCG 21324 >seq785 Length=139575 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTA-AGATCTAAGGAA 115586 ||||||||| ||||||||||| |||| |||||||||||||| | | | |||| |||||| Sbjct 12248 TCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGTGGAGCGATCAAAGGAA 12189 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 12188 CCATAACTGAT-TAATGAGCCATTCG 12164 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTA-AGATCTAAGGAA 114389 ||||||||| ||||||||||| |||| |||||||||||||| | | | |||| |||||| Sbjct 12248 TCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGTGGAGCGATCAAAGGAA 12189 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 12188 CCATAACTGAT-TAATGAGCCATTCG 12164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397013136964360