Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq10130 194 2e-44 seq9909 102 1e-16 seq51 89.7 6e-13 >seq10130 Length=961328 Score = 194 bits (214), Expect = 2e-44 Identities = 896/1398 (64%), Gaps = 58/1398 (4%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 296270 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 296211 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | || | || ||| Sbjct 296210 GCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCC 296151 Query 114062 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 114115 || || | |||||| || | || | | |||||| |||| || || Sbjct 296150 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGGGTCTTCTCCC------ACATGTCGTAC 296097 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC 114175 ||||| | || || | | ||||| ||||| | |||||||| |||||| || || Sbjct 296096 TGGAGCACCCCCCGGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTCCGCC 296037 Query 114176 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 |||| ||| |||| ||||| || || ||||| || || ||||| || || | | || Sbjct 296036 GCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTG 295977 Query 114236 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 114295 | || |||||| || || |||| | || || || || | || || ||| Sbjct 295976 AGCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGA 295917 Query 114296 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC--- 114352 || ||||| |||| ||| || || || || | | | || || || ||| ||| Sbjct 295916 CCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAG---CGCTCGGCCTCGGGG 295860 Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 || || || | || | ||||| ||| | || || || || || ||||| |||| Sbjct 295859 ACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGGTGACG 295800 Query 114413 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 114472 | ||||| | | | || || | || ||| |||| ||| | |||||| Sbjct 295799 GCGGCCAGCTTCTTGAAGTCGAAGGTCCG---CTCGGGCGTGACGTACATGTTGAGGGCG 295743 Query 114473 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 114532 || || ||||| || || || | ||| ||||| ||| |||| | | || || Sbjct 295742 ATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTG 295683 Query 114533 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || | || | ||| |||||||||| ||||| || || ||| ||| || || Sbjct 295682 CAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCG 295623 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||||| ||||| || |||||||| || |||| || || || | ||| Sbjct 295622 TCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACCA- 295564 Query 114653 ACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 114710 || | || ||| ||| || | ||||||||| |||||||||||||||||| Sbjct 295563 -CAGCTGCTGGGCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGA 295505 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAG 114769 | | || ||||| || ||| | ||| || || || || ||||| || | Sbjct 295504 GCGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCG-CTGGGACACATC 295446 Query 114770 AGAGACCATTGACCACCCTCCTCAACAC--GCTTCATGAAGAGGTCTGGGATCCAGAGAG 114827 || ||||| | || | ||| ||| || ||||||| ||||| |||||||| || Sbjct 295445 AGGGACCAGT--CCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAGGC 295388 Query 114828 CTGAGAAGAGATCCC--GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 114885 | ||||||| |||| | | || ||| || | | ||| || || || ||||| Sbjct 295387 CGTAGAAGAGGTCCCTGGCCCGCT-GCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAG 295330 Query 114886 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTAC 114941 ||||| | | || ||||||||| |||||||||| |||| | || || Sbjct 295329 GAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTT 295270 Query 114942 GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGA 115001 | | || |||||| || || | || ||| || | || || ||||| || | | Sbjct 295269 GTTG-CCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCA 295211 Query 115002 TACCATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGA--CA--T 115055 || | || | ||| || || || ||| || | | | | | || || | Sbjct 295210 GGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCG--TCGAGCGGATGCAGCT 295153 Query 115056 CATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 115115 || | || || || || || ||| |||| ||||| | ||||||| | |||| Sbjct 295152 CACCGC----CACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCG 295097 Query 115116 TGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTT 115175 || ||||||| || ||||| ||| |||| | || | ||||||||||| |||| | Sbjct 295096 TGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCT 295037 Query 115176 GTGGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-T 115232 | |||| |||||| || ||||||||||| || || | ||||| ||||| || | | Sbjct 295036 GCGGCCGGTTGGTG--CCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAAC-CACTTCT 294980 Query 115233 GGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 115292 |||| | | ||| ||||| | | ||||| ||||| ||||| || || | || Sbjct 294979 CCGACAGCAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCG 294920 Query 115293 AGACCCGCATAAACATGT 115310 | || ||||| | ||||| Sbjct 294919 ACACGCGCATGAGCATGT 294902 >seq9909 Length=2276304 Score = 102 bits (112), Expect = 1e-16 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||| ||| ||||||||||| ||||| || |||| ||| || | ||| |||||| Sbjct 1378325 CTCATCTTTACTTGTGTACTCTATGATTTCTGTGCACAGATTGCTGGA--CTTGATGGTG 1378268 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| || | || || | ||| |||| || || |||||||| |||||||| ||||| Sbjct 1378267 CCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTG 1378208 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 114653 |||||||| || || |||| || || || | ||||| Sbjct 1378207 CCCGTCTCTGTCTGCGACTCGATGATGGCGTGCCAGA 1378171 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||||| ||||| | ||||||||||||||| ||| ||||| ||||| Sbjct 1381397 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 1381338 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| || |||||||| Sbjct 1381337 GCTGTGGGCATTGGGGCCAAAAGCAGGCTGTT 1381306 >seq51 Length=752366 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 126080 ATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 126139 ||||||||||| ||| || || || |||||||| || | |||||||| |||| | || Sbjct 77569 ATGAGTTCATTGGAGTAGGTAAGGCCCGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATG 77628 Query 126140 GCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 ||| |||||| || ||||||||||| ||||||||| || || || | || ||||| Sbjct 77629 GCAGCAAATGAGCCAGAGAAGAAGATCCCCTCCACAGCTGCAAAAGCCACAAGTCGCTC 77687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597277586754400