Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq10130 367 1e-96 >seq10130 Length=961328 Score = 367 bits (406), Expect = 1e-96 Identities = 1060/1609 (66%), Gaps = 53/1609 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| || |||||| || ||||| || ||||| | || | | Sbjct 294823 TACAACTTCTTCGGCTTCAAGACCCTGGAGCGCTCCTACCTGCTGAAGATCAACGGGAAG 294882 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| ||||| || |||| |||||||| | | ||||| ||||||| ||| Sbjct 294883 GTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGTGTCGGTGGGGATCCACGGCCGGGAC 294942 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGG---GACAAGAGGTATACCA 93889 || ||| || | | | ||| || ||| | || ||| ||| || Sbjct 294943 AT--CGAC------GCCGCCATCGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACGC 294994 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTT 93947 ||| | ||||| || |||||||| || ||| |||| || ||| |||| || || Sbjct 294995 ACGCCTCGCCGACGCTCTTCAACGCCGGCACCAACCGG--CCGCAGCTGTCCAGCTGCTT 295052 Query 93948 CCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGC 94007 |||| || | | |||| |||| |||| || || | ||||| |||||| | || || Sbjct 295053 CCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGC 295112 Query 94008 GACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGG 94067 |||||| || | || || || ||||| | || | | | || | | ||| Sbjct 295113 CCTCATCTCCAAGTCGGCCGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCTCGACGGG 295172 Query 94068 TTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTT 94127 ||||||| ||| ||||| |||| |||||||||||| || || ||||| ||||||| Sbjct 295173 CAGCTACATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCGATGCTGCGGGTCTA 295232 Query 94128 CAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGT 94187 ||||||| | || ||||||||||||||||| || | |||| || | ||||| | Sbjct 295233 CAACAACACCGCCCGCTACGTGGACCAGGGCGGCAACAAGAGGCCCGGCGCCTTCGCCAT 295292 Query 94188 CTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGG 94247 || || ||||| |||||| |||||| | ||| | || ||| |||||| || Sbjct 295293 GTACCTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGG 295352 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 ||| || | || ||||||| ||||||||||||| || ||| | || ||||| || || Sbjct 295353 CAAGGAGGAGCAGCGGGCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCAT 295412 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 || || || |||| ||| | |||| || | ||||||| || |||||||| || Sbjct 295413 GAGGCGGGTGGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAGCGAGTGTCCCGGCCT 295472 Query 94368 GTCCGACGTTTGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCA 94426 | ||| || || | | || |||| | || | ||||| || |||| Sbjct 295473 GGACGAGTGCTGGGGGGAG-GAGTTCGAGACGCTCTACACAAAGTACGAGGCGGAGGGGC 295531 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | |||||| || | || | |||||||| | ||| | || ||| || Sbjct 295532 GGGTGAAGAAGGTGGTGAAGGCCCAGCAGCTGTGGTACGCCATCATCGAGTCGCAGACGG 295591 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||| || ||||||||||| | | ||||||| | |||| |||| |||||||||| Sbjct 295592 AGACCGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGA 295651 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| || |||||| || || || ||||||||| | || |||| || || Sbjct 295652 ACCTGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGCAAGG 295711 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 ||||| | || || || ||||||| ||||||| || || || | || || | ||| Sbjct 295712 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCC--TCAACAT--GTACGTCACGCCC 295767 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG--GATGGT 94724 || | ||||| | || |||| | | || | ||| ||| || Sbjct 295768 GAGCG--------GACCTTCGACTTCAAGAAGCTGGCCGCCGTCAC--CAAGGTGATCGT 295817 Query 94725 CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 ||||||||||| ||| ||||| | |||| |||||| ||||| ||||| ||| ||| Sbjct 295818 GAAGAACCTGAACAAGGTCATCGAGATAAACTACTACCCGGTCCCCGAGGCCGAGCGCTC 295877 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 ||| | || ||||||||||||||||||||||||||| | || ||||| | | | Sbjct 295878 CAACAAGCGCCACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCT 295937 Query 94845 GATGCGTCTGCCC-TACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 |||||| || ||| | ||| | ||| ||| | | || | | || ||||| | Sbjct 295938 GATGCG-CTACCCGTTCGAGAGCGCCGAGGCGCAGCTGCTCAACGTCCAGATCTTCGAGA 295996 Query 94904 GCATTTATTACGGGGC-CATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 ||| || ||| || | || | | | | | | |||| |||| | ||||| Sbjct 295997 CCATCTACCACGCCGCGCTGGAGGCCAGCTG-CGAGCTGGC---GGCGGA-GCTGGGCCC 296051 Query 94963 C-ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 | |||| ||| | || |||||| | | ||| | | |||| |||| | |||| Sbjct 296052 CTACGAGACGTACGAGGGCTCGCCCGTCAGCCGGGGGGTGCTCCAGTACGACATGTGGGA 296111 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAACA 95078 || ||| | | |||| |||| ||||||| || | | | || | | || Sbjct 296112 GAAGACCCCCACCGACCTGTGGGACT-GGAAGCTGCTGAAGGAGAAGA--TCGCCCGGCA 296168 Query 95079 CGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCT 95138 ||| |||| ||| ||||| |||||||||||||||| |||||||| || |||||||| Sbjct 296169 CGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGATCCT 296228 Query 95139 TGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGC 95198 |||||||||||||| |||| ||| |||| |||| | |||| | | ||||| ||| | Sbjct 296229 GGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTCTC 296288 Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTG 95258 ||| || |||| || ||||| |||||||| |||||||||| | || |||| Sbjct 296289 CGGCGAGTTCCAGATCGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGGCTGTG 296348 Query 95259 GGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAG 95307 | | || | | |||||| | ||| | | |||||||||| ||||| Sbjct 296349 GAGCGAGGACATGAAGAACAAGCTGATCGCCAACAACGGCTCCATCCAG 296397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494660246472800