Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10130 401 6e-107 seq348 93.3 4e-14 seq9909 82.4 8e-11 seq483 82.4 8e-11 >seq10130 Length=961328 Score = 401 bits (444), Expect = 6e-107 Identities = 939/1397 (67%), Gaps = 30/1397 (2%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| ||||| Sbjct 296264 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTG 296205 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAA 153193 |||||| |||| || || |||| || ||||||| | ||| || ||||||| Sbjct 296204 GGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTC-TCCTTCAG 296146 Query 153194 CGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC 153253 | || ||| |||||||| | | || ||| | ||||||||||||||| | ||| || Sbjct 296145 CAGCTTCCAGTCCCACAGGTCGGTGGGGGTCTTCTCCCACATGTCGTACTGGAGCACCCC 296086 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG-GCCAGTTCGC 153312 || ||| |||| ||| | |||| |||| ||| || | ||||| |||| Sbjct 296085 CCGGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCA-GCTCCGCCGCCAGCTCGC 296027 Query 153313 AGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 |||| ||||| |||||| | | ||| ||||| ||| ||| || ||||| | || Sbjct 296026 AGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCG 295967 Query 153373 CTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 | || |||||||| |||| ||||| ||| | |||||||||||||||||||||| | Sbjct 295966 CCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGC 295907 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGA 153491 ||| ||||||||| || || || |||| |||| ||| |||| | || |||| Sbjct 295906 CGATGCCGATGGGCCGGTGGCGCTTGTTGGAGCGC-TCGGCCTCGGGGACCGGGTAGTAG 295848 Query 153492 TTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTC 153551 || ||||| | ||||| ||||| ||| | ||| || || | || || ||| Sbjct 295847 TTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGGTGACGGCGGCCAGCTTC 295788 Query 153552 TCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 | ||| || ||||| ||| | || | ||| | || | ||| || || ||||| Sbjct 295787 TTGAAGTCGAAGGTCCGCTCG--GGCGTG-ACGTACATGTTGAGGGCGATGGAGGCCAGG 295731 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTG 153671 || ||||||||| ||| || | | || ||| ||| | ||||| ||||||||||||| Sbjct 295730 TTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTG 295671 Query 153672 CATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGC 153731 || || ||| ||||| || ||||| ||||| ||||| ||||| ||||| ||| ||||| Sbjct 295670 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGC 295611 Query 153732 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGC 153790 ||||| || ||||||||| |||| |||| ||| | || ||| | ||| || Sbjct 295610 ATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGAT-GGCGTACCACAGCTGCTGGGC 295552 Query 153791 TCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTC 153850 |||| || | || ||||| |||||| ||| || ||| ||||| Sbjct 295551 CTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAACTC 295492 Query 153851 GTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATAT 153909 || || |||| ||| | ||||||||||||| | || ||||||||||| ||||| | Sbjct 295491 CTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTG-GGACACATCAGGGACCAGTCCT 295433 Query 153910 CGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGC 153969 || | | || || | ||||||||| || || | ||| || |||| | |||||| | Sbjct 295432 GGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCC 295373 Query 153970 --GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTC 154027 || | ||| |||||| |||| |||| ||||| | || | | | | ||| Sbjct 295372 TGGCCCGCTGC--TCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTC 295315 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATC 154084 | |||||| || || | ||| | ||| | ||| || | | || |||||||| || Sbjct 295314 GAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTC 295255 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCC 154144 |||| ||| | | |||||| |||| |||| ||| || |||||||| | | | |||| Sbjct 295254 CACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCC 295195 Query 154145 GTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA-----ACGCCA 154199 |||||| ||| | ||||| | | || || |||||| | | ||||| Sbjct 295194 GTTGGTGCCGGCGATGTAGCTGC--CCGTCGAGC---GGATGCAGCTCACCGCCACGCCG 295140 Query 154200 ATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCG 154259 ||||||||| | |||| || ||| ||||| | ||||| ||||||||| ||| Sbjct 295139 ATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCG 295080 Query 154260 ATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCC 154319 ||||| ||||| | | | |||| ||| || ||| ||||| | || || Sbjct 295079 ATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTGCCG 295020 Query 154320 GCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTT 154379 || ||||| || || |||||||| ||| || | || || | |||||| Sbjct 295019 GCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGTC 294960 Query 154380 TCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGC 154439 ||||||||| | ||||| || |||||| || || | || |||||||||||||||||| Sbjct 294959 TCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGTGC 294900 Query 154440 TGCGGACGTTCGGCGAC 154456 ||||| || ||||| || Sbjct 294899 TGCGGCCGCTCGGCCAC 294883 >seq348 Length=361584 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 ||||| |||||||||||||| || |||||| | || || |||||| || |||||| Sbjct 109572 GAGCGTGTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCCGCC 109513 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 ||||| | | || | || |||| | |||||||||||||| |||||||||||| Sbjct 109512 ATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAG 109459 >seq9909 Length=2276304 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| | ||| || | ||| || |||||| | || ||| ||||| ||||||||| | Sbjct 1378311 TGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 1378252 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 153759 || | || | ||||| ||||| ||| ||||||||||||| ||| ||||| |||| Sbjct 1378251 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGCG 1378192 Query 153760 TTTCGACGAT 153769 |||| ||| Sbjct 1378191 ACTCGATGAT 1378182 >seq483 Length=217099 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || || || || | | Sbjct 215595 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 215654 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || || || ||||| ||| || ||| | Sbjct 215655 AAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTCACA 215714 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||||||||| | || | || || ||||| || || || Sbjct 215715 TTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 215774 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 215775 ACAAAGATCTGCATG 215789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496199250609600