Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10130 215 5e-51 seq483 96.9 3e-15 seq9955 89.7 5e-13 seq9909 84.2 2e-11 >seq10130 Length=961328 Score = 215 bits (238), Expect = 5e-51 Identities = 953/1476 (65%), Gaps = 71/1476 (5%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| |||||| ||| | ||||||| | ||| |||||||||| ||| || || | Sbjct 296330 AGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGGGTG 296271 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | ||||| ||||||||||| || || ||||| || || | Sbjct 296270 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 296211 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 ||||| |||||| |||| ||||| ||| ||||||||||| | ||||| ||| Sbjct 296210 GCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCC 296151 Query 146224 C---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGT---AGTTGTCG 146277 | || || ||| | ||||| | || ||||| | | || | | ||||| Sbjct 296150 TTCAGCAGCTT---CCAGTCCCACA---GGTCGGTGGG---GGTCTTCTCCCACATGTCG 296100 Query 146278 TAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATC 146337 || || | || ||| | ||| |||||||| || || || || | Sbjct 296099 TACTGGAGCACCCCCCGGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTCC 296040 Query 146338 TTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAG 146397 ||||| |||||||| || ||||| || | ||| |||||||| |||| | | Sbjct 296039 GCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACG 295980 Query 146398 TTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGG 146455 |||| || ||| ||||| |||| ||| | ||| || || | || | |||||||||| Sbjct 295979 TTGA-GCAGCTGCGCCTCGGCGCTCTCGAACGGG-TAGCGCATCAGGATGAAGGCGTCGG 295922 Query 146456 CGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCG 146515 | |||||||| | |||| || | ||| ||||| |||||| | ||| || || Sbjct 295921 CCAGACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAG--CGCT-CGGCCT 295865 Query 146516 CAGTG---GGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCG 146572 | | | || |||| ||| | ||||||| |||||| || || ||||| | || | Sbjct 295864 CGGGGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGG 295805 Query 146573 TCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGA 146632 | | |||| |||| || || | | ||| |||| || |||||| Sbjct 295804 TGACGGCGGCCAGCTTCTTGAAGTCGAAGGTCC--GCTCGGGCGT-GACGTACATGTTGA 295748 Query 146633 CGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCT 146692 |||||| ||||||| ||| || ||||| |||||||||| | ||| ||| | || Sbjct 295747 GGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCT 295688 Query 146693 CGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---T 146749 ||| |||||||||||||||||||||| |||||| || | ||||| || |||| | Sbjct 295687 CGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT---CTTGCGGT 295631 Query 146750 TGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGA 146809 |||||| |||||||||||||||||| || ||||| || | | ||||| |||| Sbjct 295630 TGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATG- 295572 Query 146810 ATCTAAACAAATCT-CT-GGCCTTTACTTGTCTTTCGT--ACAGTTTATTCTTTTCGTAT 146865 | | || | || || |||||| || | ||| | | | | | ||||| Sbjct 295571 -GCGTACCACAGCTGCTGGGCCTTCAC--CACCTTCTTCACCCGCCCCTCCGCCTCGTAC 295515 Query 146866 TTCTCGTACAATATTTCAAA--ACTAGAACC-GTACTCGTCGAGGAGGCCGGGATACTTT 146922 || ||| | | || || || || | ||||||| ||||||||| ||| Sbjct 295514 TTTGTGTAGAGCGTCTCGAACTCCTCCCCCCAGCACTCGTC---CAGGCCGGGACACTCG 295458 Query 146923 TTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGA 146982 ||||||| | ||| ||||| || | || || ||| || ||| |||| ||||| Sbjct 295457 CTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGG 295398 Query 146983 ATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTC-T 147041 ||||| ||||| | | ||| | ||| ||||| |||| |||| | || | Sbjct 295397 ATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTT-CTTCTT 295339 Query 147042 CAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCC 147101 || | |||| ||| | | || ||||| ||||||| ||| ||||| ||||| Sbjct 295338 CAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCC 295279 Query 147102 TTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACAT 147158 | | || |||||||| || |||| ||| | |||| ||| |||| || | ||| Sbjct 295278 GGGCCTCTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCAT 295219 Query 147159 GGACACGAGGCCGCCGGATTT---TGTGGTGC---CGTTGTA-TTGAGCGCTGACGCTTT 147211 | ||| |||||| ||| || |||||| || |||| || || || | Sbjct 295218 CGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGAT 295159 Query 147212 GCACGCTCAGC------CCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCA 147265 ||| ||||| | |||| || ||| || || || || | ||| ||| | | Sbjct 295158 GCA-GCTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGA 295100 Query 147266 AGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACA 147325 || | ||||||||| ||||||||||| ||||| ||| ||||||| || ||| Sbjct 295099 GCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACA 295040 Query 147326 TTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAAC--GTGCC 147383 || || || ||||| || || ||||| || ||||||||||||| | | Sbjct 295039 GCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCT 294980 Query 147384 CAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAG 147443 | || || || | ||||| || |||||| | ||| |||||| || ||| Sbjct 294979 CCGA--CAGCAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCAC 294922 Query 147444 GGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGC 147479 | |||||||||||||||||||| || || || || Sbjct 294921 CGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGC 294886 >seq483 Length=217099 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || ||| Sbjct 215592 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 215651 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || || Sbjct 215652 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTC 215711 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| || ||| || || | ||| | || ||||| || || || Sbjct 215712 ACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTC 215771 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 215772 TTGACAAAGATCTGCATG 215789 >seq9955 Length=1786201 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || |||||||| ||| Sbjct 3873 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 3932 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 3933 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 3992 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || | | ||| | || || || || || || Sbjct 3993 ACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGGTCTTCCCAGTGAGGGTC 4052 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 4053 TTGACGAAGATCTGCAT 4069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || |||| || || ||||| ||| || |||||||| ||| Sbjct 4101 GTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 4160 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || || Sbjct 4161 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTC 4220 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| || || || Sbjct 4221 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 4280 Query 127097 TTTACAAAAATCTGCATGG 127115 || ||||| || ||||||| Sbjct 4281 TTGACAAAGATTTGCATGG 4299 >seq9909 Length=2276304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG 146748 || || | ||| || |||||| |||||||| |||||| ||||| ||||| | | || Sbjct 1378300 ATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 1378241 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||| ||||||||||||||||||||| Sbjct 1378240 TTGCAGGCGTCCTTGTAGAGCATGTACGG 1378212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475440292523200