Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10130 158 1e-33 seq9909 95.1 1e-14 >seq10130 Length=961328 Score = 158 bits (174), Expect = 1e-33 Identities = 910/1439 (63%), Gaps = 42/1439 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| ||||| || || || |||||||||||||| | | || | ||||| || Sbjct 294880 AAGGTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGTGTCGGTGGGGATCCACGGCCGG 294939 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| | ||| || ||| | || |||| | || | ||||||||||| Sbjct 294940 GACATCGACGCCGCCATCGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACGCACGCC 294999 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || | ||| ||||||||| || ||| ||| |||| || || |||| Sbjct 295000 TCGCCGACGCTCTTCAACGCCGGCACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTG 295059 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || | | ||||| | || Sbjct 295060 GCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCCTCATC 295119 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||| | | ||||||||| |||||| ||| | | | | | || || ||| Sbjct 295120 TCCAAGTCGGCCGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCTCGACG-GGCAGCTA 295178 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| ||||| |||| | | || ||| || | | |||||||| || ||||| || Sbjct 295179 CATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCGATGCTGCGGGTCTACAACAA 295238 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAA----ACGCAAAGGCGCGATGGCGATCTATC 123312 | ||| || |||| |||||||||||||| | || ||||| | || || || | Sbjct 295239 CACCGCCCGCTACGTGGACCAGGGCGGCAACAAGAGGCCC-GGCGCCTTCGCCATGTACC 295297 Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGG 123372 | || ||||||||| | || |||| ||| || | | | || |||| ||| || Sbjct 295298 TGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGCAAGG 295357 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 | || || ||| | || | || |||| | ||| | ||||| |||| ||| | | Sbjct 295358 AGGAGCAGCGGGCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAGGC 295417 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGC 123491 | || | | || | ||||| || ||||||||| | || |||||||||| || | Sbjct 295418 GGGTGGAGAGCAACCAGGACTGGTCCCTGATGTGTCCC-AGCGAGTGTCCCGGCCTGGAC 295476 Query 123492 GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA----- 123546 || | || | |||| || | | ||| | | |||||| ||| ||| Sbjct 295477 GAGTGCTGGGGGGAGGAGTTCGAGACGCTCTACACAAAGTACGAG-GCGGAGGGGCGGGT 295535 Query 123547 -AACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTC 123605 || | | | || | | || ||| || || | | || ||||| | || Sbjct 295536 GAAGAAGGTGGTGAAGGCCCAGCAGCTG---TGGT--ACGCCATCATCGAGTCGCAGACG 295590 Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| ||||| |||||||||||||| |||||||||||| | || | ||| ||| Sbjct 295591 GAGACCGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAG 295650 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA---GCGAT 123722 ||| |||| || || || || || || || ||| |||| | | || | || || | Sbjct 295651 AACCTGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGCAAG 295710 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAAC 123782 | ||| |||||||| || || |||| || || | | || | |||| | Sbjct 295711 GACGAG---GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCC 295767 Query 123783 G-GCG--CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTG 123839 | ||| | || | ||| | | ||| | | || || | || ||||| || Sbjct 295768 GAGCGGACCTTCGACTTCAAGAAGCTGGCCGCCGTCACCAAGGTGATCGTGAAGAACCTG 295827 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGGAAGCGCGTTTGTCTAATTTG 123896 ||||| | ||||| | || | || || | |||| | ||| | | || | Sbjct 295828 AACAAGGTCATCGAGATAAACTACTACCCGGTCCCCGAGGCCGAGCGCT---CCAACAAG 295884 Query 123897 AAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGC 123956 ||| | || |||| | ||| | || || |||||||||| || | || ||||| Sbjct 295885 CGCCACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGC 295944 Query 123957 ATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTAT 124016 |||| ||| |||| ||| || || |||| || || || ||| || || || Sbjct 295945 TACCCGTTCGAGAGCGCCGAGGCGCAGCTGCTCAACGTCCAGATCTTCGAGACCATCTAC 296004 Query 124017 TACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTAC 124076 ||| ||| ||||||| |||||||| || ||| | ||| | ||||| | ||| Sbjct 296005 CACGCCGCGCTGGAGGCCAGCTGCGAGCTGGCGGCGGAGCTGGGCCCCTACGAGACGTAC 296064 Query 124077 GCGGGCA-GCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGAC 124135 | |||| ||||| | ||||| || | | ||||||||||||||| | || || || Sbjct 296065 GAGGGCTCGCCCGTC-AGCCGGGGGGTGCTCCAGTACGACATGTGGGAGAAGACCCCCAC 296123 Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC--GCACGGTTTGCGTAAC 124193 | |||||||||||| | | || | | | |||| | |||||| || | ||| Sbjct 296124 CGACCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCCGGCACGGCGTGAGGAAC 296181 Query 124194 TCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAA 124253 ||| || |||| |||||| || || |||| || || || | || |||||||| Sbjct 296182 AGCCTGCTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGATCCTGGGCAACAACGAG 296241 Query 124254 TCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCA 124312 ||| ||||| | | ||| | ||| | ||| || || || | ||||||| || || Sbjct 296242 TCCATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTCTCCGGCGAGTTCCA 296300 >seq9909 Length=2276304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 1378200 GAGACGGGCACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 1378259 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || || | || ||||| ||| | ||||| || || |||| Sbjct 1378260 AATCTGGGCACCATCAAGTCCAGCAATCTGTGCACAGAAATCATAGAGTACA 1378311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451945682592800