Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq216 122 1e-22 >seq216 Length=444560 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || | || || ||||||||||| ||||||||| | Sbjct 85515 GCGGTGTTGACGATGTCGAAGCCGGCCGTGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 85574 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||| ||| || |||| || ||||||| ||| || |||||||||| ||| | Sbjct 85575 GGGGAGCAAATGGGATTTCCCATCAGGCCTTTCAGGGAGAAAGGAGCCCCCATCTCCACC 85634 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || |||||||| | || || || || || | | ||| | |||||| Sbjct 85635 ATCGTCTCCCCAAAGATGGCGTTCGTCCGGGGCTTCTCCACCAGCAGGCCGGGGTAGAGC 85694 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || ||||||||||| || || | |||| ||| || || || || || ||| Sbjct 85695 TCCACTGCGTCGACGTCGCCGTAAAGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCT 85754 Score = 96.9 bits (106), Expect = 5e-15 Identities = 181/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || |||||||| | | ||||| || || | | | || ||||||| | | | Sbjct 86478 CCGTCCTGCAATCTGCTTGCTAAACGAATCCACCAGGTTGTTGATGCCGTGCTCGGTCAC 86537 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA---CTTCGCGTCGCCTATGCGAAA 9548 | || ||||| | || || | || |||| || |||| | ||| ||| | || Sbjct 86538 CACAGAGGTGTTGAACACAAACTCTTTATAACTGTAATCCTTCTCCTCG---ATGTGGAA 86594 Query 9549 ATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTT 9608 | ||||||| ||| | |||||| |||| ||||| |||||||| | || || ||||| Sbjct 86595 ACTGTCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCAGAAGCGATGCGGTT 86654 Query 9609 CTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGT 9667 |||||||| ||| || | | ||| || | |||||||||||| |||| | |||||| | Sbjct 86655 TTGGTACTGGAAG-CGCTGATTGAAGAGCAGCTCCGGGTCAAACTTTAGTTTGAAGTGAT 86713 Query 9668 ACCCGCTGAGTTGCTGGACATA 9689 | || || || ||||| || || Sbjct 86714 ATCCACTTAGATGCTGCACGTA 86735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723635905612000