Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10130 201 1e-46 seq9909 104 3e-17 seq51 102 1e-16 >seq10130 Length=961328 Score = 201 bits (222), Expect = 1e-46 Identities = 846/1310 (65%), Gaps = 52/1310 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 296270 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 296211 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || || || ||| Sbjct 296210 GCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCC 296151 Query 116023 TTGAG-GGC-----GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || || || |||||| || | || | |||| ||||||||| || || Sbjct 296150 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGG---GGTCT---TCTCCCACATGTCGTAC 296097 Query 116077 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 116134 ||||| | || || |||| ||||| ||||| | ||||| || |||||| || Sbjct 296096 TGGAGCACCCCCCGGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTCCG 296039 Query 116135 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 116194 |||||| ||| |||| ||||| || || ||||| || || ||||| || || | | | Sbjct 296038 CCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGT 295979 Query 116195 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGA 116254 | | || |||||| || || |||| | || || || || | || || | Sbjct 295978 TGAGCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCA 295919 Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-- 116312 |||| ||||| |||| ||| || || || || | | | || || || ||| ||| Sbjct 295918 GACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGA---GCGCTCGGCCTCGG 295862 Query 116313 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 || || || | || | ||||| ||| | || || || || || ||||| |||| Sbjct 295861 GGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGGTGA 295802 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 | ||||| | | | || || | || ||| |||| ||| | |||| Sbjct 295801 CGGCGGCCAGCTTCTTGAAGTCGAAGGTCCG---CTCGGGCGTGACGTACATGTTGAGGG 295745 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 |||| || ||||| || || || | ||| ||||| ||| |||| | | || | Sbjct 295744 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGG 295685 Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 | || | || | ||| |||||||||| ||||| || || ||| ||| || | Sbjct 295684 TGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGG 295625 Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611 | |||||||||||||| || ||||| || |||||||| || |||| || || || | || Sbjct 295624 CGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACC 295565 Query 116612 ATACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 ||| | || ||| ||| || | ||||||||| |||||||||||||||| Sbjct 295564 --ACAGCTGCTGGGCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTA 295507 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 ||| | ||| ||||| || ||| |||| ||| || || || || ||||| | Sbjct 295506 GAGCGTCTCGAACTCCTC-CCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGACACA 295448 Query 116729 AGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 || ||||| | || | ||| |||||| ||||||| ||||| |||||||| || Sbjct 295447 TCAGGGACCA--GTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAG 295390 Query 116787 CGCCG-AGAAGAGATCCC--GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 |||| ||||||| |||| | | || ||| || | | ||| || || || ||| Sbjct 295389 -GCCGTAGAAGAGGTCCCTGGCCCGC-TGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTC 295333 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 || ||||| | | || ||||||||| |||||||||| |||| | | || || Sbjct 295332 CAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGA-AGGCGCCGGGCC 295274 Query 116904 AC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || |||||| || || | || || ||| | || || ||||| || | Sbjct 295273 TCTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCA 295214 Query 116960 TGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCG 117018 | || | || | ||| || || || ||| | | | | | | || | Sbjct 295213 CCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCG-TCGAGCGGATGCAG 295155 Query 117019 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTG 117078 | || || || || || ||| |||| ||||| | ||||||| | |||| || Sbjct 295154 CTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTG 295095 Query 117079 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGT 117138 ||||||| || ||||| ||| |||| | || | ||||||||||| |||| || Sbjct 295094 TCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGC 295035 Query 117139 GGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||| |||||| || ||||||||||| || || | ||||| ||||| Sbjct 295034 GGCCGGTTGGTG--CCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAAC 294987 >seq9909 Length=2276304 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||| ||||| | ||||||||||||||| ||| ||||| ||||| Sbjct 1381397 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 1381338 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| || |||||||| Sbjct 1381337 GCTGTGGGCATTGGGGCCAAAAGCAGGCTGTT 1381306 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 |||||| ||| ||||||||||| ||||| || |||| ||| || ||| | |||||| Sbjct 1378325 CTCATCTTTACTTGTGTACTCTATGATTTCTGTGCACAGATTGCTGGACT--TGATGGTG 1378268 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| || | || || | ||| |||| || || |||||||||||||| || ||||| Sbjct 1378267 CCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTG 1378208 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||| || || |||| || || || | ||| Sbjct 1378207 CCCGTCTCTGTCTGCGACTCGATGATGGCGTGCCA 1378173 >seq51 Length=752366 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 127553 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 127612 ||||||||||| ||| || || || |||||||| || | |||||||| |||| | || Sbjct 77569 ATGAGTTCATTGGAGTAGGTAAGGCCCGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATG 77628 Query 127613 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| ||||||||||||||||||||||||||||||| || || || | || ||||| Sbjct 77629 GCAGCAAATGAGCCAGAGAAGAAGATCCCCTCCACAGCTGCAAAAGCCACAAGTCGCTC 77687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613429131208800