Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10130 277 3e-69 seq9909 102 1e-16 >seq10130 Length=961328 Score = 277 bits (306), Expect = 3e-69 Identities = 608/899 (68%), Gaps = 28/899 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| | ||||||||| | ||| | |||||| | |||| | ||||||||| Sbjct 295698 CTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 295639 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||||||||| |||| ||||||||| | |||| | ||| | ||| ||||| |||| || || Sbjct 295638 CTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTC 295579 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||||| | | |||| |||| | |||||| | ||| | | Sbjct 295578 GATGA-TGGCGTACCACAGCTGCTGGGCCTTCACCACCTTCTTCAC---CCGCCCCTCCG 295523 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 |||||| |||||||| |||| | | || || || | || |||||| | || | Sbjct 295522 CCTCGTACTTTGTGTAGAGCGTCTCGAACTCCTCCCCCCAGCACTCGTCCA---GGCCGG 295466 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | ||||||||||||| ||||| ||| | | | ||||| | ||| |||| Sbjct 295465 GACACTCGCTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACA 295406 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 ||||| ||||||||||||||| || || || | ||||| | || | || || Sbjct 295405 GGTCGGGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGT 295346 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| ||| || | | |||| |||||||||||| | ||| ||| Sbjct 295345 TCTTCTTCAGCTCCAGG-AAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCG 295287 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | ||||| ||||||||||| || ||||||||||| ||| | | |||| | || Sbjct 295286 AAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACC 295227 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG--GCCGAGCCTT 205412 ||||||||||||||||| ||||||| | | ||||| |||| | |||| || | | | Sbjct 295226 CGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTC 295167 Query 205413 CAGCCCTCACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGG 205469 ||| | || || | ||| |||| || ||||| | |||||| ||| ||| Sbjct 295166 GAGC-----GGATGCAGCTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGG 295112 Query 205470 CGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGA 205528 |||||| |||| || ||| ||||||||| ||||| |||||| || | || ||| Sbjct 295111 CGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGG 295053 Query 205529 TAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGG 205588 |||| | ||||| | ||||||||| |||| ||||||||| || |||||| Sbjct 295052 AAGCAGCTGGACAGCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGC 294993 Query 205589 CTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCG 205648 |||| | |||||| || |||| ||||| | || || | || |||| Sbjct 294992 GTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCG 294933 Query 205649 TGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTC 205708 || || || | | | | ||||| | ||| || || | ||| |||| || |||| Sbjct 294932 TGGATCCCCACCGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTG 294873 Query 205709 ACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTC 205767 | ||| ||||| |||| | ||| ||||| || | | || |||||| ||| | |||| Sbjct 294872 ATCTTCAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTC 294814 Score = 152 bits (168), Expect = 8e-32 Identities = 286/418 (68%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCT 204162 ||| |||||||||| ||| ||||| | || || | ||||| | ||||| |||| || Sbjct 296394 GATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATGTCCTCGCTCCACA-GCCCGCGCT 296336 Query 204163 GA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTC 204221 |||| ||| | ||||| ||||||| |||||| || || ||||| || |||| | Sbjct 296335 CCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCGGC 296276 Query 204222 GGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGG 204281 ||||| | | |||| ||||| | | |||| | |||||||||||| | ||||| |||| Sbjct 296275 GGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGG 296216 Query 204282 TGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCC 204341 || ||| ||||||||||| ||||| |||||| ||| | ||| |||| || | Sbjct 296215 TGGAGGCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCT 296156 Query 204342 TGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACT 204401 | |||||| ||||||| || | |||| || ||||||||||| ||| Sbjct 296155 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGGGTCTTCTCCCACATGTCGTACT 296096 Query 204402 GAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTG 204461 | | | || | ||||| || ||||| ||||||| || || ||| | | Sbjct 296095 GGAGCACCCCCCGGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTCCGCCG 296036 Query 204462 CCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 |||||| ||| ||| ||| ||| | ||| |||||||| |||||||| ||||| Sbjct 296035 CCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTT 295978 Score = 114 bits (126), Expect = 2e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | ||| || | ||| || ||||| |||| Sbjct 296691 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTTGGCTCGGCGATGT 296632 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 ||||||||||||||||||| ||||||||| ||||||| || || || ||||| || | Sbjct 296631 GAATGTTCAGAGACTGGCTCTGGTCGATG-TAGGCGCCGCGGTCCGCCGCCATCTTCAGC 296573 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 | ||||||||| || || ||||| || |||||| ||| Sbjct 296572 ACGGTCTTCTGGGAGATTTCCCAGACAGTCTTGTACA 296536 >seq9909 Length=2276304 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||||||||| | ||||||| | ||||||| ||| || ||||| ||||| || Sbjct 1382349 CTTCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTCGGCTCGGCGATGTGGAT 1382290 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||||||||||||||| ||||||||| || ||| || ||||| ||||| || | | || Sbjct 1382289 GTTCAGAGACTGGCTCTGGTCGATG-TAGCTGCCGCGGTCTGCTGCCATCTTCAGGACGG 1382231 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||||| || || ||||| || || || Sbjct 1382230 TCTTCTGGGAGATTTCCCAAACTGTTTT 1382203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795054016500800