Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq483 129 7e-25 seq9955 114 1e-20 >seq483 Length=217099 Score = 129 bits (142), Expect = 7e-25 Identities = 174/241 (72%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || || | ||| | ||||| || | || |||||| ||||| ||||| Sbjct 215555 TTACTGGCCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 215614 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || ||||| | || || ||||||||||| || || |||| | ||||||||| Sbjct 215615 GTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 215674 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || |||||||||| |||||| || | || | | |||||||| | Sbjct 215675 AGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGG 215734 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 ||||| || | |||||||| ||||| || || || || |||||||| ||||| ||||| Sbjct 215735 CTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGC 215794 Query 46599 A 46599 | Sbjct 215795 A 215795 >seq9955 Length=1786201 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||| || || ||||| | || || ||||| ||||| || || Sbjct 4107 TCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 4166 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | || |||||||||| |||||| || | || Sbjct 4167 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTCACATTC 4226 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| | ||||| |||| |||||||| ||||| || || || || ||| Sbjct 4227 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 4286 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 4287 AAGATTTGCAT 4297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565166473413600