Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq348 129 6e-25 seq483 127 2e-24 seq9955 125 7e-24 seq51 96.9 3e-15 >seq348 Length=361584 Score = 129 bits (142), Expect = 6e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 110702 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAGAGATG 110761 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || |||||||| | ||| |||| | ||||||| || ||||||||||||||||||| Sbjct 110762 AAGTGGCGCTCCTCGTCCTTCAGGGAGTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 110821 Query 133399 T 133399 | Sbjct 110822 T 110822 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| ||||||||| ||||| | || | Sbjct 109440 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 109499 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| ||| || ||||||| |||||| ||||| ||||| | Sbjct 109500 TCAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAGG 109559 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 109560 CCACCACACGCTCACC 109575 >seq483 Length=217099 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| ||||||||| | || || ||| | Sbjct 215792 AAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTGGAGCC 215733 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | | | |||| || |||| ||||| ||||| || ||| | || Sbjct 215732 TAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 215673 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | |||||||| ||||| Sbjct 215672 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 215613 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||| ||||| | || || || |||| || ||| | || || |||| Sbjct 215612 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCAGGGGTGGCC 215560 >seq9955 Length=1786201 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | | || ||| ||| | Sbjct 4069 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGTAGGTGGAGCCCAGC 4010 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 4009 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3950 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || |||||||||||||| || | |||||||| ||||||||| Sbjct 3949 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 3890 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || |||| || ||| | || || || Sbjct 3889 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCAGGGGTGG 3843 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 4297 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4238 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| ||||| ||||| || ||| | ||||| Sbjct 4237 GACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 4178 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || |||||||||||||| || | |||||||| ||||||| | Sbjct 4177 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACACC 4118 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || | |||| || ||| | || || || Sbjct 4117 ATCCAGAAAGAATCCACCCTCCGCCTGGTCCTCCGTCTCAGGGGTGG 4071 >seq51 Length=752366 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||| ||||| ||||||| |||||| |||| Sbjct 82424 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCAGCGAAGAAGGCCAAAACGTGCGAGATG 82483 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 ||||| ||||| |||| || ||||||| | | ||| ||||| || |||||| Sbjct 82484 AAATGTTTCTCGTCCGGCTTCAGACGGTCCCAGTGGGCCAGGTCTTTGGAGAGATCCACC 82543 Query 133399 T 133399 | Sbjct 82544 T 82544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| ||||||||| ||| | | || | ||| ||||||||||| | || | Sbjct 77555 CCTCATCCCTGCTAATGAGTTCATTGGAGTAGGTAAGGCCCGGCATGAGGCCTCTCTTCT 77614 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| | ||||| || || ||| || ||||||| ||||| || || || |||| Sbjct 77615 TCAGCCAGTAGATGGCAGCAAATGAGCCAGAGAAGAAGATCCCCTCCACAGCTGCAAAAG 77674 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || ||||| || Sbjct 77675 CCACAAGTCGCTCCCC 77690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500109153011200