Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq9947 208 6e-48 seq642 93.3 3e-13 seq10154 87.8 1e-11 >seq9947 Length=1900904 Score = 208 bits (230), Expect = 6e-48 Identities = 900/1411 (64%), Gaps = 18/1411 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||| || || || || |||||||| | ||||| ||||| || || || || || Sbjct 881981 GCAGACACGTTTAGGATGCCGTTGGCATCAATGTCAAAGGTGACCTCTATCTGTGGCACT 881922 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| ||||||| |||| ||| | | ||| ||||||| ||| || || || Sbjct 881921 CCTCTGGGAGCAGGGGGGAGACCTGTGAGCTCAAACTTTCCCAGGAGATTGTTGTCCTTG 881862 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || || || || | | || || || | | || |||||||| || Sbjct 881861 GTCATGGCTCTCTCGCCTTCATACACCTGAATCAGGACGCCTGGCTGGTTATCTGAGTAC 881802 Query 517439 GTTGTAAATACTCTGGATTTTTTACA-AGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | ||| | |||| | | | | ||| || || ||||| | | |||| ||| Sbjct 881801 GTGGAAAAGA-TCTGAGTCTGCTTCGTAGGGATGGTGGTGTTCCGTTTGATAAGGGGGGT 881743 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||||| ||||| ||||| || | || || || | || | ||||| | || | | Sbjct 881742 CATAACTCCACCAGCTGTCTCAATGCCCAGGGACAAGGGCGCCACATCCAGGAGCAGTAA 881683 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 || ||| | || || || | || | || ||||| || || | || ||||| || Sbjct 881682 ATCTTGGACGTTCTCTGAGGTGTCCCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTA 881623 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 517677 || || ||||||||||| || | | ||| ||||| | | |||||||||| |||| Sbjct 881622 GGCCACCGCTTCATCAGGGTTGATACTTTTGTTTAGATCTCTACCATTGAAGAAATCCTG 881563 Query 517678 AAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 || || | ||| || || || || | | ||| || || |||| ||||||||||| | Sbjct 881562 TAGGAGCT-TCTGTATTTTGGGGATTCTTGTTGAGCCACCGACTAGGACAATTTCATGGA 881504 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 || ||||||||||| || | ||| || | || ||||| ||||| || | | Sbjct 881503 TCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACAGGTTCCAGTGTTCCCC 881444 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 517854 | || | ||| ||| || || || || || || || || ||| | || || || Sbjct 881443 TGAAGAGGTCCGAATTGAGCTCCTCAAAGCGTGCCCTTGT--GATTGAGGTGTAAAAGTC 881386 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 ||| || || |||| || |||| ||||| | | ||||| || |||| | | Sbjct 881385 AATGCCCTCAAACAGTGAGTCAATCTCAATGCTGGCCTGAGTGCTGGAGGATAAGGTCCT 881326 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTGATTCA 517970 || || | ||||| ||||| | ||||| | | |||| | | ||| |||| Sbjct 881325 CTTTGCCCTCTCACAAGCTGTGCGCAGTCTCCTCACGGCTCTCTTGTTCTGGCTGAT--- 881269 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 |||| | || | |||||| || || || || ||| | | || | || || |||| Sbjct 881268 -ATCTTTCTTGTGTTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTCGGTTGTCAA 881210 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || || || | | || | || | || ||| | || | || | || || | Sbjct 881209 AGTCCTCCCCGCCAAGGTGTGTGTCCCCCGCTGTGGCTTTCACCTCAAATATGCCGTCCT 881150 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | || | | || ||| || || ||||| | |||||| || || ||||| Sbjct 881149 CAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGAGGACATTGC 881090 Query 518151 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 ||| || | |||||| || || || |||| || || || || || ||||| | Sbjct 881089 GCTCTCCTCTTTTGCCTTTATCCAGGCCGTAGGCAATGGCTGCTGCTGTGGGCTCATTTA 881030 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 | || | || ||||| | || | || ||| ||||| || |||||||| || || | Sbjct 881029 TGATCCGCAGGACATTTATTCCGGAGATCACTCCGGCATCCTTTGTGGCTTGCCTCTGAG 880970 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAA 518329 |||| ||||| || || || || || || || || | | || ||| | ||| | || Sbjct 880969 AATCATTAAAGTAAGCTGGCACTGTGATTACCGCGTTTGACACACTCTGTCCCAGAA-AA 880911 Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 || || ||| | |||||||| | | ||| || ||||| | || || | | Sbjct 880910 GCCTCGGCTATTTCTCTCATTTTAACCAGGACCATCGAAGAAATCTCCTCAGGACAGAAA 880851 Query 518390 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 518449 ||| ||| | |||| || | | | || || |||| || || Sbjct 880850 GTCTTAATTTCTCCCTTATATTCCACCTGGACTTTAGGCTTCCCGTTGTCATTGATCACC 880791 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 ||||| |||||| ||||| || || || || | ||||| ||| ||| ||||| Sbjct 880790 TTAAAGGGCCAGAGCTTCATGTCAGACTGGACCACTGCGTCATCAAACCTTCTTCCAATG 880731 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 | ||||| |||||||| || || ||||| || || || ||| |||| | ||||| ||| Sbjct 880730 AGACGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATGGCAACTTGGTTCTTGGCAGCA 880671 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 |||||||| || ||||| || || || | ||||| ||||| || | || ||| Sbjct 880670 TCTCCAATGAGCCTCTCTGTGTCAGTGAAGGCCACATAGCTAGGAGTGGTCCTGTTGCCT 880611 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCAT 518660 ||||| || || || ||||| ||||| |||| Sbjct 880610 TGATCGTTGGCGATGATTTCCACTTTTCCAT 880580 >seq642 Length=144868 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | ||| |||| |||||| || || | || | ||||| ||||||||||| || Sbjct 134724 CAAATACAGTGTTGGCTGGATTCATGGCCACCTGGTTCTTGGCAGCATCTCCAATGAGTC 134665 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||||| ||| ||||| | || ||||| ||||| |||| Sbjct 134664 TCTCTGTATCTGTGAAGGCCACATAACTTGGCGTTGTCCTGTTTCCTTGGTCATTGGCAA 134605 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 |||| || ||||| |||| || | | || ||||| | | || || |||| |||| Sbjct 134604 TAATCTCCACTTTGCCATGCTGGAAGATCCCCACACATGAATATGTGGTACCTAGGTCAA 134545 Query 518703 TACCAA 518708 | |||| Sbjct 134544 TGCCAA 134539 Score = 91.5 bits (100), Expect = 1e-12 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| || || || |||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 136988 CACATTGAGGATGCCGTTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGGACTCCTCT 136929 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC--AGATTATTATTATCTTTAGTG 517381 | |||||||||| || || || | |||| ||||| |||| |||||||||||| || Sbjct 136928 CGGAGCAGGTGGAATGCCAGTCAGTTCAAAT-TTCCCTAAGAT-ATTATTATCTTTGGTC 136871 Query 517382 AATTTTCGTTCACCCTCG 517399 | |||||| || ||| Sbjct 136870 ATGGCTCGTTCCCCTTCG 136853 >seq10154 Length=897660 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| |||||||| || || || ||||| || | || |||| Sbjct 573166 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCCGTGGGCTCGTTAATGATACGCAGAACA 573107 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| |||| || || || || || || | || || || || || || Sbjct 573106 TTAAGTCCAGAAATGGTTCCCGCGTCCTTGGTCGCCTGGCGCTGAGAGTCATTGAAGTAG 573047 Query 518285 GCAGGAACAGT 518295 ||||||||||| Sbjct 573046 GCAGGAACAGT 573036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780317234867080