Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq10130 167 3e-36 seq51 84.2 3e-11 >seq10130 Length=961328 Score = 167 bits (184), Expect = 3e-36 Identities = 661/1027 (64%), Gaps = 35/1027 (3%) Strand=Plus/Plus Query 112071 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 112130 |||||| |||| | | || ||||||| || || ||||| || || || ||||||| | Sbjct 295357 GAGGAGCAGCGGGCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAGG 295416 Query 112131 AGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTC 112187 | || |||||| | | ||||| || | ||||| | || ||||| || Sbjct 295417 CGGGT---GGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAGCGAGTGTCCCGGCCTG 295473 Query 112188 TCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 ||| ||| | ||| |||||||| || | ||||||||||||||||||| || | || Sbjct 295474 GACGAGTGCTGGGGG-GAGGAGTTCGAGACGCTCTACACAAAGTACGAGGCGGAGGGGCG 295532 Query 112247 GGCGACTGCGACGGTG-----CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 112301 || || | |||| ||||| || ||||| | || || || |||| || Sbjct 295533 GGTGAAGAAGGTGGTGAAGGCCCAGCAGC-----TGTGGTACGCCATCATCGAGTCGCAG 295587 Query 112302 ACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 112361 || ||||| || || || || ||||| ||||| |||||||| |||| ||||| || || Sbjct 295588 ACGGAGACCGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAG 295647 Query 112362 AAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGAC 112421 |||| |||| |||||| | ||||||||| || || | |||| || || | Sbjct 295648 CAGAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGC 295707 Query 112422 AAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCA 112481 || || ||| ||| || || ||||| || || ||||| ||| || ||| || || Sbjct 295708 AAGGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCC 295767 Query 112482 GAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAAC 112541 ||| ||| || || | | || || || || || || || || ||| Sbjct 295768 GAG---CGGACCTTCGACTTCAAGAAGCTGGCCGCCGTCACCAAGGTGATCGTGAAGAAC 295824 Query 112542 CTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAAT 112598 || |||| || || || | ||| | ||||| || ||| | | || || || Sbjct 295825 CTGAACAAGGTCATCGAGATAAACTACTACCCGGTCCCCGAGGCCGAGCG---CTCCAAC 295881 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGT 112658 | | | ||||| || || || |||| ||||| ||||| || || | ||||| || Sbjct 295882 AAGCGCCACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATG 295941 Query 112659 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 ||| || | || || || ||| ||| || |||| | | || || ||||| || Sbjct 295942 CGCTACCCGTTCGAGAGCGCCGAGGCGCAGCTGCTCAACGTCCAGATCTTCGAGACCATC 296001 Query 112719 TATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778 || |||||||| || ||||| || | ||| |||| | || || || || || || Sbjct 296002 TACCACGCCGCGCTGGAGGCCAGCTGCGAGCTGGCGGCGGAGCTGGGCCCCTACGAGACG 296061 Query 112779 TTTGAGGGTTCTCCAGCTTCA--CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA 112836 | ||||| || || | ||| | |||||||| || | || ||||||| || || Sbjct 296062 TACGAGGGCTCGCC--CGTCAGCCGGGGGGTGCTCCAGTACGACATGTGGG-AGAAGACC 296118 Query 112837 CCAAGC-TTCACTACGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 || | | | | |||| ||| ||| || ||||| ||| | | || | | Sbjct 296119 CCCACCGACCTGTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCCGGCACGGCGTGAG 296177 Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954 ||||| || || |||| || ||||| || ||||||||||| || ||| |||| || || Sbjct 296178 GAACAGCCTGCTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGATCCTGGGCAACAA 296237 Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 113014 || | | | || ||||||| | |||||||| | | |||| | || ||||| Sbjct 296238 CGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTCTCCGGCGAGTT 296297 Query 113015 TGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 113074 ||| |||||| || ||| | | ||||| | ||| || || ||| | |||| Sbjct 296298 CCAGATCGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGGCTGTGGAGCGAGGA 296357 Query 113075 TATGAAG 113081 |||||| Sbjct 296358 CATGAAG 296364 >seq51 Length=752366 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 102238 |||||||| | || ||||| ||| ||||| |||||||||||||| || || ||| || Sbjct 77687 GAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGGATCTTCTTCTCTGGCTCATT-TGCTGC 77629 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || || ||||| |||||| |||| |||||||| || || || |||||| || || || Sbjct 77628 CATCTACTGGCTGAAGAAGAGAGGCCTCATGCCGGGCCTTACCTACTCCAATGAACTCAT 77569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620663410529600