Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9943 93.3 5e-14 seq9886 93.3 5e-14 seq9873 93.3 5e-14 seq9862 93.3 5e-14 seq849 93.3 5e-14 seq766 93.3 5e-14 seq194 93.3 5e-14 seq138 93.3 5e-14 seq121 93.3 5e-14 seq10130 91.5 2e-13 seq348 84.2 3e-11 >seq9943 Length=4897111 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 4837450 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 4837392 >seq9886 Length=2686141 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2405862 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2405920 >seq9873 Length=2792437 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2678462 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2678520 >seq9862 Length=3134460 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 426650 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 426592 >seq849 Length=88033 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 45390 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 45332 >seq766 Length=108537 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 72506 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 72448 >seq194 Length=487182 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 112369 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 112311 >seq138 Length=532606 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 468985 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 468927 >seq121 Length=614549 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 506673 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 506615 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||| Sbjct 507736 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAACGTCGCGGGTTCGATCCCC 507680 >seq10130 Length=961328 Score = 91.5 bits (100), Expect = 2e-13 Identities = 475/738 (64%), Gaps = 35/738 (5%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 || ||| ||||||||| | ||||||| |||| |||| |||||||| ||||| || Sbjct 296279 CGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGG 296220 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTC--GTC- 109860 || ||||| || ||||||||||| |||| || || ||||| | | || | | | | Sbjct 296219 GCGGTGGAGGCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCG 296160 Query 109861 -TTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAAT---TTAGTCTCACC 109916 | | | | ||| ||| || ||| | || |||| | | | | || | Sbjct 296159 ATCTTCTCCTTCA-GCA--GCTTCC-AGTC-------CCAC-AGGTCGGTGGGGGTCTTC 296112 Query 109917 ATCCCACATATCTGGTTGAAGTACACCCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGT 109975 |||||||| || || || || ||| | || | | || || |||| | | |||||| Sbjct 296111 -TCCCACATGTCGTACTGGAGCACCCCC-CGGCTGACGGGCGAGCCCTCGTACGTCTCGT 296054 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 | | ||| || | |||| |||| | ||||| || || || || || || |||| Sbjct 296053 AGGGGCCCAGCTCCGCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCT 295994 Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAA-GGGAAGACCACAAAGA 110094 | || || || | || | || | | ||| | | ||||| ||| || || | || Sbjct 295993 CGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGA 295934 Query 110095 ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAG 110154 | || | || || |||||||| || |||| || ||||| || || | |||| ||| Sbjct 295933 -TGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAG 295875 Query 110155 CG-TCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG- 110212 || ||| || || ||||| |||| ||||||||| || || |||||| Sbjct 295874 CGCTCG-GCCTCGGGGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCAC 295816 Query 110213 --TCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270 |||| ||| |||| | || || | | | ||||| || || ||| | Sbjct 295815 GATCAC---CTTGGTGACGGCGGCCAGCTTCTTGAAGTCGAAGGTC--CG-CTCGGGCGT 295762 Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330 ||| || || ||| || || || || || ||||| || | |||||| ||| ||| Sbjct 295761 GACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGT 295702 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 | | |||| | || || || | |||| | ||| ||| |||| ||||| ||| || Sbjct 295701 GAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 295642 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||| |||||| || ||||| ||||||||||| || || || || |||||||| || Sbjct 295641 GCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGA 295582 Query 110451 CTTGAGAATGGCCTTCCA 110468 || || ||||| | ||| Sbjct 295581 CTCGATGATGGCGTACCA 295564 >seq348 Length=361584 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || |||||| || || ||||| || ||||| ||||| ||||| ||||| Sbjct 109453 GATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGAT 109512 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 ||| || || || ||||||||||||||||| |||||| || | | |||||| Sbjct 109513 GGCGGCGAACGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAGGCCACCACACGCTC 109572 Query 119648 A 119648 | Sbjct 109573 A 109573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588901052804000