Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10130 185 1e-41 seq9909 114 2e-20 seq51 100 3e-16 >seq10130 Length=961328 Score = 185 bits (204), Expect = 1e-41 Identities = 948/1490 (64%), Gaps = 54/1490 (4%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || || | | || || |||| ||| || |||||| Sbjct 296364 CTTCATGTCCTCGCTCCACAGCCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 296305 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||| || | |||| | | |||||||| | ||||||| || | Sbjct 296304 GATCTGGAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 296245 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 296244 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGGGCCAGCAGCAG 296185 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | ||| ||||| || | | |||||| | | Sbjct 296184 GCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 296125 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG--GACGTGGGAGAACC 106137 | | || || || ||||||| || | || |||||||| || |||| | ||| || Sbjct 296124 GGTGGGGGTCTTCT-CCCACATGTCGTACTGGAGCACCCCCCGGCTGACGGGCGAG--CC 296068 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| | ||||| |||| || | | | |||| || ||||| |||||||| | || Sbjct 296067 CTCGTACGTCTCGTAGGGGCCCAGCTCCGCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGC 296008 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || ||||| | | || | | || || || | || || | Sbjct 296007 GTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTCTCGAACGG 295948 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 |||||| || || || | || || ||||| || || || | || || || | ||| Sbjct 295947 GTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGGCCGGTG 295888 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCG 106374 ||| | || || ||| | | ||| || || || | ||| | || ||||| Sbjct 295887 GCGCTTGTTGGAG---CGCTCGGCCTCGGGGACCGGGTAGTAGTTTATCTCGATGACCTT 295831 Query 106375 GTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCG 106434 ||| || || || | | ||| |||| | || || | | || || || || Sbjct 295830 GTTCAGGTTCTTCACGATCACCTTGGTGACGGCGGCCAGCTTCTTGAAGTCGAAGGTCCG 295771 Query 106435 AGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 106494 ||| |||| ||| | |||||||| || |||| ||||| || ||| ||| Sbjct 295770 ---CTCGGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTC 295714 Query 106495 ATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAA 106554 ||||| ||| |||| | | || || || | |||| | ||| || || |||| Sbjct 295713 GTCCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAG 295654 Query 106555 ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 106614 |||| ||||| ||||| |||||| || ||||||||||||||||||||||| || || Sbjct 295653 GTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGT 295594 Query 106615 CTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGC 106674 ||||||||| |||| || || || | ||||| | ||| || | || | Sbjct 295593 CTCCGTCTGCGACTCGATGATGGCGTACCACAGCTGCTGGGCCTTCACCACCTTCTTCAC 295534 Query 106675 CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGG 106733 ||| |||||||||||||||||||||||||| | || |||||||| ||| | || ||| Sbjct 295533 CCGCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAACTCCTC-CCCCCAGCACTCGT 295475 Query 106734 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAACCCG 106791 || || || || | ||||| | || ||||| | || | ||| ||||| Sbjct 295474 CCAGGCCGGGACACTCGCTGGGACACATCAGGGACCA--GTCCTGGTTGCTCTCCACCCG 295417 Query 106792 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 106851 | ||||||| ||||| || ||||||||| | ||||| || || ||| ||| || Sbjct 295416 CCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTC 295357 Query 106852 GTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 106910 | || ||| || | | ||| ||||| || | | || |||||| ||||| | Sbjct 295356 CTTGCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCA 295298 Query 106911 GATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCT 106963 | || | |||| | || ||| | | ||||| || | || ||||| || Sbjct 295297 GGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCC----TGGTCCACGTAGCGGGCG 295242 Query 106964 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 107023 ||| ||| | || || ||||| || | | || | || | || || || || Sbjct 295241 GTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCC---- 295186 Query 107024 ATACGAGATTTA-TTGGCTCTC-ACATCATGGATGT-----GCATCCCAATACCCCCAGC 107076 | ||| || || | || | ||| | | || || || || || || Sbjct 295185 ---GGCGATGTAGCTGCCCGTCGAGCGGATGCAGCTCACCGCCACGCCGATGCCGCCGGC 295129 Query 107077 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 107136 | |||| ||||| | || |||| | | || || | ||||| || | ||| ||| || Sbjct 295128 CGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTC 295069 Query 107137 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAG 107194 ||| |||| | |||||||| ||||||| |||||| | |||||| || || |||||| Sbjct 295068 CTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTG--CCGGCGTTGAAG 295011 Query 107195 AGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || | ||||| ||||| || | | |||| | || ||| ||||| | | | Sbjct 295010 AGCGTCGGCGAGGCGTGCGTGAAC-CACTTCTCCGACAGCAGGTTGTACGTCTCGATGGC 294952 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | || ||||| |||||||| || | | ||| ||||| | ||||| Sbjct 294951 GGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGT 294902 >seq9909 Length=2276304 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| ||||||||||| |||||||| |||| ||| ||| || || || Sbjct 1378325 CTCATCTTTACTTGTGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCC 1378266 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||||| |||| ||||||| || ||||||||||||||||| ||||| || Sbjct 1378265 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCC 1378206 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| ||||| |||| || || || | ||| Sbjct 1378205 CGTCTCTGTCTGCGACTCGATGATGGCGTGCCA 1378173 >seq51 Length=752366 Score = 100 bits (110), Expect = 3e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| |||||||| ||| || ||||| |||||||| || | ||||| Sbjct 77555 CCTCATCCCTGCTAATGAGTTCATTGGAGTAGGTAAGGCCCGGCATGAGGCCTCTCTTCT 77614 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| || || || ||| ||||| || ||||||||||| ||||||||| ||||| Sbjct 77615 TCAGCCAGTAGATGGCAGCA-AATGAGCCAGAGAAGAAGATCCCCTCCACAGCTGCAAAA 77673 Query 117412 GCAAAAAGGCGCTC 117425 || | ||| ||||| Sbjct 77674 GCCACAAGTCGCTC 77687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589905724943200