Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9947 156 3e-32 seq642 102 7e-16 seq10154 93.3 3e-13 >seq9947 Length=1900904 Score = 156 bits (172), Expect = 3e-32 Identities = 397/594 (67%), Gaps = 14/594 (2%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || || ||||| || | || |||| ||||| Sbjct 880531 ATTGGCATCGATCTGGGCACCACCTACTCCTGCGTTGGGGTCTTCCAGCATGGAAAAGTG 880590 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| || ||||| |||||||| ||||| || ||||| ||||| | ||||| || Sbjct 880591 GAAATCATCGCCAACGATCAAGGCAACAGGACCACTCCTAGCTATGTGGCCTTCACTGAC 880650 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||| ||||| || || | |||| ||| || || || ||||| Sbjct 880651 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 880707 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| |||||| | ||||||||||| ||| |||| | || ||| | Sbjct 880708 ACAATCTTTGATGCCAAACGTCTCATTGGAAGAAGGTTTGATGACGCAGTGGTCCAGTCT 880767 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||||| ||||| || | | | |||| || || || || | | || | Sbjct 880768 GACATGAAGCTCTGGCCCTTTAAGGTGATCAATGACAACGGGAAGCC-TAAAGTCCAGGT 880826 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || | ||| |||| || | || || | ||||| || ||||| | Sbjct 880827 GGAAT-ATAAGGGAGAAATTAAGACTTTCTGTCCTGAGGAGATTTCTTCGATGGTCCTGG 880885 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | ||||||| | ||| |||| |||||| | || || || | | || ||||| | Sbjct 880886 TTAAAATGAGAGAAATAGCCGAGGCTTTTCTGGGACAGAGTGTGTCAAACGCGGTAATCA 880945 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| || || | ||||| || || ||||| ||| || Sbjct 880946 CAGTGCCAGCTTACTTTAATGATTCTCAGAGGCAAGCCACAAAGGATGCCGGAGTGATCT 881005 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||| | ||||| || || || || ||||| || || || || || |||| || || | Sbjct 881006 CCGGAATAAATGTCCTGCGGATCATAAATGAGCCCACAGCAGCAGCCATTGCCTACGGCC 881065 Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | |||||| || || || ||| | ||||| |||||||||||| ||| || Sbjct 881066 TGGATAAAGGCA-AAAGA-GGAGAGCGCAATGTCCTCATCTTTGATCTTGGTGG 881117 Score = 156 bits (172), Expect = 3e-32 Identities = 447/681 (66%), Gaps = 6/681 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || || || || | || || | || || | ||||| ||| ||||| | Sbjct 881305 ACAGCTTGTGAGAGGGCAAAGAGGACCT-TATCCTCCAGCACTCAGGCCAGCATTGAGAT 881363 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || ||| | |||||||| ||||| | | | || | || | ||||| ||||| || Sbjct 881364 TGACTCACTGTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTTGAGGA 881423 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | ||| || ||||| || |||| | ||||| || || | | || |||| | Sbjct 881424 GCTCAATTCGGACCTCTTCAGGGGAACACTGGAACCTGTTGAGAAGGCCCTACAAGATGC 881483 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||||||||| | ||||||||||| || || ||||| || |||||||| || Sbjct 881484 TAAGCTGGATAAATCCAAGATCCATGAAATTGTCCTAGTCGGTGGCTCAACAAGAATCCC 881543 Query 552152 TAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | | | || || |||||||||| | | |||| ||||| | || Sbjct 881544 CAAAATACAGAAGCTCCTACAGGATTTCTTCAATGGTAGAGATCTAAACAAAAGTATCAA 881603 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTAT--TCTTTCTGGACAA 552269 || ||||| || || ||||| ||||| ||| | || || ||||| || | |||| | Sbjct 881604 CCCTGATGAAGCGGTGGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGGGAC-A 881662 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 || | || || | ||| || | | || | ||||| | || | || || || | Sbjct 881663 CCTCA-GAGAACGTCCAAGATTTACTGCTCCTGGATGTGGCGCCCTTGTCCCTGGGCATT 881721 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 || |||| ||| || ||||||| |||||| | | || || || || ||| || Sbjct 881722 GAGACAGCTGGTGGAGTTATGACCCCCCTTATCAAACGGAACACCACCATCCCTACGAAG 881781 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 | ||| | ||||| ||||| |||||||| || | | || ||||| | | | Sbjct 881782 CAGACTCAGATCTTTTCCACGTACTCAGATAACCAGCCAGGCGTCCTGATTCAGGTGTAT 881841 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 ||||| || ||| | || || || || |||| || || | ||| | | |||| Sbjct 881842 GAAGGCGAGAGAGCCATGACCAAGGACAACAATCTCCTGGGAAAGTTTGAGCTCACAGGT 881901 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 | || |||||||| | ||||| || || || || || || || || || |||||||| Sbjct 881902 CTCCCCCCTGCTCCCAGAGGAGTGCCACAGATAGAGGTCACCTTTGACATTGATGCCAAC 881961 Query 552570 GGAATTTTGAATGTGACTGCT 552590 || || | || ||| ||||| Sbjct 881962 GGCATCCTAAACGTGTCTGCT 881982 >seq642 Length=144868 Score = 102 bits (112), Expect = 7e-16 Identities = 108/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| ||||||| || || || || || || || || ||||| || |||||||| || | Sbjct 135253 TTACCAATGCAGTTATCACAGTCCCTGCTTACTTCAACGACTCCCAGCGTCAAGCCACCA 135312 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | ||||||||| || |||| || || || |||||||| ||||||||||| || |||| Sbjct 135313 AGGATGCTGGAACCATCTCTGGCCTCAACGTGCTTCGTATCATCAATGAACCCACAGCTG 135372 Query 550512 CTGCACTTGCATATGGACTTG 550532 | || ||||||| || |||| Sbjct 135373 CAGCTATTGCATACGG-CTTG 135392 >seq10154 Length=897660 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || || || || || || || || ||| ||| Sbjct 573036 ACTGTTCCTGCCTACTTCAATGACTCTCAGCGCCAGGCGACCAAGGACGCGGGAACCATT 573095 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 |||||||||||||||| ||||| || || || || || |||||||| |||| ||||| Sbjct 573096 TCTGGACTTAATGTTCTGCGTATCATTAACGAGCCCACGGCTGCTGCCATTGCTTATGGC 573155 Query 550529 CTTGATAAA 550537 || || ||| Sbjct 573156 CTGGACAAA 573164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028757635688200