Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq297 140 3e-28 >seq297 Length=3848896 Score = 140 bits (154), Expect = 3e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 30151 ATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCT 30210 ||||| | |||||||| || || |||||||||||||| |||||||| ||||||||||| Sbjct 2862394 ATGTCTTTATACTCTGCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCC 2862335 Query 30211 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 30270 ||||| || || | ||||||| ||||||| ||| | | ||| |||||||| ||| Sbjct 2862334 CCCTCCTCTCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCC 2862275 Query 30271 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 2862274 CAGATCTTCACGCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 2862228 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| ||||| || | ||||||||||||||||| || Sbjct 2866599 AGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGC 2866540 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || |||||||| | || | |||||| |||||||| || ||||| ||||||| Sbjct 2866539 ACCCCCAGGCCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 2866480 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || |||||| || || || |||||||| Sbjct 2866479 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAG 2866436 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||||||||||| |||||| |||| ||| |||||||| ||||||||| || Sbjct 2866355 CTTTGGGGTTCCAGGCGCACATGATGATCCGCCGGTCCTCTGGGTTTTTCCTGATGGTGT 2866296 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | | | |||| |||||||| ||||| || || ||||| |||| Sbjct 2866295 CGATGACGTTCTGCAGCTGGTCCACGCCTTGTCCAGAGTAATCTG 2866251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408566903325140