Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10130 367 2e-96 seq9909 129 1e-24 seq348 120 6e-22 seq51 96.9 6e-15 >seq10130 Length=961328 Score = 367 bits (406), Expect = 2e-96 Identities = 855/1275 (67%), Gaps = 42/1275 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCT---GGGCGCAAGACTGCGTC-AG 221421 || ||||||| ||||||||| || ||| || ||| | |||| | || || || Sbjct 296069 CCCTCGTACGTCTCGTAGGGGCC---CAGCTCCGCCGCCAGCTCGCA-GCTGGCCTCCAG 296014 Query 221422 GGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGT 221481 || ||||||||||||||||| |||||| |||||| || ||||||| Sbjct 296013 CGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTCTC 295954 Query 221482 GAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGG 221541 ||| || |||| || ||| |||||||||| ||||| || ||||| |||||||| Sbjct 295953 GAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGG 295894 Query 221542 CCTGTGTCTCCTGTTGGAAGCGGCCG-CTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 || ||| | | ||||||| ||| || | || || || || || |||| | ||||| | Sbjct 295893 CCGGTGGCGCTTGTTGGA-GCGCTCGGCCTCGGGGACCGGGTAGTAGTTTATCTCGATGA 295835 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 ||||| |||||| ||| || || || ||| |||||||| | | ||| Sbjct 295834 CCTTGTTCAGGTTCTTCACGATCACCTTGGTGACGGCGGCCAGCTTCTTGAAGTCGAAGG 295775 Query 221661 CCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGT 221720 | |||| | |||| | ||| ||| ||||| | | |||||||| Sbjct 295774 TCCGCTCG-----GGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGT 295730 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGC 221780 | || |||||||||||||||||| |||| ||| | | ||| || ||||||||||||| Sbjct 295729 TGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGC 295670 Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 |||||||||| ||||||| | || || |||||| ||| |||||||||||||||| Sbjct 295669 ACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCA 295610 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGC 221900 | |||| ||| |||||| ||| | | | | || || ||| || | ||| Sbjct 295609 TGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACCACAGCTGCTGGGCCT 295550 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 ||||| | |||| || ||||| | || | ||| || |||||| | || |||| Sbjct 295549 TCACCACCTTCTTCACCCGCCCCTCCGCCT---CGTACTTTGTGTAGAGCGTCTCGAACT 295493 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 || || | |||||||||||| |||||| | |||||||||||| ||||| || Sbjct 295492 CCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGACACATCAGGGACCAGTCCT 295433 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 |||| | |||| | |||||| ||||| ||||||||||| | | ||||| || | Sbjct 295432 GGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCC 295373 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 ||| ||||||||||||| ||| |||| ||| |||| |||| || || || | ||| Sbjct 295372 TGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGA 295313 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 ||||||||||||||| || | ||| | |||||||| | ||||||||| ||||| |||| Sbjct 295312 AGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCA 295253 Query 222201 CCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | | | |||| ||| || || |||| ||||| |||||||| |||| Sbjct 295252 CGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGT 295193 Query 222261 TGGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCA 222319 ||||||| ||||| | ||| | | | | | || | | || |||||| || Sbjct 295192 TGGTGCCGGCGATGTAGCTGCCCGTC-GAGCGGATGCAGCTCACCGCCACGCCGATGCCG 295134 Query 222320 CCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAG 222379 ||||| || ||||| | |||||| |||||| ||||| ||||||||| || | Sbjct 295133 CCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTG 295074 Query 222380 TCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTA 222439 || ||||| | | |||||| || || |||| ||| | | ||| | |||||| Sbjct 295073 TCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTGCCGGCGTTG 295014 Query 222440 AACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACG 222499 || ||||| || |||||| || || | | |||| ||| | ||||||||| | | Sbjct 295013 AAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCGATG 294954 Query 222500 ACTCTGGCGATGTTGTCC---CCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGG 222556 | |||| | ||||| ||||| ||| || | | |||| ||||| ||| Sbjct 294953 GC---GGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGTGCTGC 294897 Query 222557 GGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTG 222613 |||| || |||| ||| | || || |||||||| || ||||| |||||| Sbjct 294896 GGCCGCTCGGCCAC-CTTCCCGTTGATCT--TCAGCAGGTAGGAGCGCTCCAGGGTCTTG 294840 Query 222614 AACCCAAAGTAGTTG 222628 || || ||| ||||| Sbjct 294839 AAGCCGAAGAAGTTG 294825 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 ||||| |||||| | | |||| | | ||| || || |||| || || | ||| | Sbjct 296390 GAGCCGTTGTTGGCGATCAGCTTGTTCTTCATGTCCTCGCTCCACAGCCCGCGCTCCGTC 296331 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || |||||| | ||| ||| || | ||||| || || ||||| |||| | | Sbjct 296330 AGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGGGTG 296271 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| | Sbjct 296270 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 296211 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 |||||||||||||| |||| |||||| ||||| Sbjct 296210 GCGGTGGGCATGGGGGCCAGCAGCAGGCTGTT 296179 >seq9909 Length=2276304 Score = 129 bits (142), Expect = 1e-24 Identities = 129/165 (78%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA-AAGAGAT 222077 || |||| || |||| | |||||||||||| ||||||||||| ||| | || || | Sbjct 1377865 CTGGTTGCTTTCCACCCGTTTCATGAAGAGGTCTGGGATCCACAG-GCCAAAGAACAGGT 1377807 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 |||||| || ||||||||| ||| |||| ||| |||| |||||||||||||| | || Sbjct 1377806 CTCTGGCCCTCTGCTCCTCTTTACCGGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGT 1377747 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||||||| || | ||| | || || |||| || Sbjct 1377746 CAGCGTGCCACGGCTCCAGGTACATGGCAAAGGCCCCTGGTCTCT 1377702 >seq348 Length=361584 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || || |||||||||||||| ||| ||| ||||| || Sbjct 109575 GGTGAGCGTGTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCC 109516 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||| Sbjct 109515 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTC 109456 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 109455 ATCAGCAGAGACGAGG 109440 >seq51 Length=752366 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || ||||| ||||||||||| ||||| ||| || || ||||| Sbjct 77690 GGGGAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGGATCTTCTTCTCTGGCTCATTTGCT 77631 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| |||||| ||| ||| || |||||| || || || ||||| || ||| Sbjct 77630 GCCATCTACTGGCTGAAGAAGAGAGGCCTCATGCCGGGCCTTACCTACTCCAATGAACTC 77571 Query 25993 ATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 77570 ATTAGCAGGGATGAGG 77555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928726604499200