Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9947 150 1e-30 >seq9947 Length=1900904 Score = 150 bits (166), Expect = 1e-30 Identities = 368/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || ||| | || || || ||| || || | || | || ||| Sbjct 880523 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCCTGCGTTGGGGTCTTCCAGCATG 880582 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| || ||||| || ||||| || || || || || ||||| | | Sbjct 880583 GAAAAGTGGAAATCATCGCCAACGATCAAGGCAACAGGACCACTCCTAGCTATGTGGCCT 880642 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | ||||| || || || |||||||||||||| || | |||| ||| || || Sbjct 880643 TCACTGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 880702 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| | |||| Sbjct 880703 CCAACACAATCTTTGATGCCAAACGTCTCATTGGAAGAAGGTTTGATGACGCAGTGGTCC 880762 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | ||||| ||| | ||||| ||||||||||| |||| || || || | | Sbjct 880763 AGTCTGACATGAAGCTCTGGCCCTTTAAGGTGATCAATGACAACGGGAAGCCTAAAGTCC 880822 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | | || |||| ||| || | || || | |||||||| ||||| Sbjct 880823 AGGTGGAATATAAG--GGAGAAATTAAGACTTTCTGTCCTGAGGAGATTTCTTCGATGGT 880880 Query 474682 TTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | ||||||| | ||| | |||| | | ||| ||||| || | | || | Sbjct 880881 CCTGGTTAAAATGAGAGAAATAGCCGAG-GCTTTTCTGGGACAGAGTGTGTCAAACGCGG 880939 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 |||| || || ||||| || |||||||||||||| | ||||| || || ||||| ||| Sbjct 880940 TAATCACAGTGCCAGCTTACTTTAATGATTCTCAGAGGCAAGCCACAAAGGATGCCGGAG 880999 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || | ||||| | || || || ||||| || |||||||| || |||| | Sbjct 881000 TGATCTCCGGAATAAATGTCCTGCGGATCATAAATGAGCCCACAGCAGCAGCCATTGCCT 881059 Query 474861 ATGGTCTTGATAA 474873 | || || ||||| Sbjct 881060 ACGGCCTGGATAA 881072 Score = 150 bits (166), Expect = 1e-30 Identities = 419/631 (66%), Gaps = 10/631 (2%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| || || ||||| || ||||| | | | || || |||||||| | Sbjct 881357 TTGAGATTGACTCACTGTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCT 881416 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 |||| || | ||| || ||||| || |||| | ||||| ||||| | | || Sbjct 881417 TTGAGGAGCTCAATTCGGACCTCTTCAGGGGAACACTGGAACCTGTTGAGAAGGCCCTAC 881476 Query 475668 GAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||| |||| || || ||||| |||| ||||||||||||| || || || || |||||| Sbjct 881477 AAGATGCTAAGCTGGATAAATC-CAAGATCCATGAAATTGTCCTAGTCGGTGGCTCAACA 881535 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGA 475785 ||||| || ||||| | |||| | | || || | || ||||||| | | |||| | Sbjct 881536 AGAATCCCCAAAAT-ACAGAAGCTCCTACAGGATTTCTTCAATGGTAGAGATCTAAACAA 881594 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTAT 475844 |||| | || ||||||||||| || || || || || || ||||| || ||||| | || Sbjct 881595 AAGTATCAACCCTGATGAAGCGGTGGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCAT 881654 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 || | | | ||||| | | || | | || | || || | || | || Sbjct 881655 GGGGGACACCTCA-GAGAACGTCCAAGATTTACTGCTCCTGGATGTGGCGCCCTTGTCCC 881713 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 | || |||| |||| ||| || ||||||| ||||| | | || || | |||| Sbjct 881714 TGGGCATTGAGACAGCTGGTGGAGTTATGACCCCCCTTATCAAACGGAACACCACCATCC 881773 Query 475965 C-ATGCA-AAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCAT 476022 | | | | | | ||| | | |||||||| || || ||||| || || || || Sbjct 881774 CTACGAAGCAGACTCAGA--TCTTTTCCACGTACTCAGATAACCAGCCAGGCGTCCTGAT 881831 Query 476023 CCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAA 476082 || | | |||||| || ||| | || || || || || || |||| ||| | Sbjct 881832 TCAGGTGTATGAAGGCGAGAGAGCCATGACCAAGGACAACAATCTCCTGGGAAAGTTTGA 881891 Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 || |||| | || ||||||||||||||||| || || || || || || ||||| || Sbjct 881892 GCTCACAGGTCTCCCCCCTGCTCCCAGAGGAGTGCCACAGATAGAGGTCACCTTTGACAT 881951 Query 476143 TGATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||||| || || || || || || ||||| Sbjct 881952 TGATGCCAACGGCATCCTAAACGTGTCTGCT 881982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267742530406640