Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq9958 179 4e-40 >seq9958 Length=1759816 Score = 179 bits (198), Expect = 4e-40 Identities = 580/883 (66%), Gaps = 22/883 (2%) Strand=Plus/Plus Query 160086 TCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGC 160145 ||||| ||| ||| || |||||||| || || || || || |||| ||| | Sbjct 1379619 TCAACCTCTGGGTCAAACTTATTTGCAAAGAGGTGCTGCTGACTC---AGGAGCCACAGG 1379675 Query 160146 ACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTAC 160205 | ||| || | ||| |||| ||||||| | ||| | || |||| || ||| Sbjct 1379676 AGGTCCCCAGCTCCGTACACACAGACGGCTCTCCTGTAGGCCCCCGTGCACGGGTAGTAA 1379735 Query 160206 AGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCC 160265 |||||||||| |||||| ||| | ||| |||||| || || ||| | ||| Sbjct 1379736 GGAGCTCCTTTGTTCACGTCCCCTGCTAGGTAAGACCACTTGACGGCCCGGGCGAGAGCC 1379795 Query 160266 TGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATA 160325 |||||||| || | ||||||| | ||| | | |||||||| ||||| Sbjct 1379796 TGCATGTCCGACACTTGGTATTTGCTGTTTGCGGGCGCCGATCCGGGAACAGAAGGCATC 1379855 Query 160326 CGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATG 160385 | ||| || |||||||||| ||| ||||| ||||||||||||||||| ||| |||||| Sbjct 1379856 CTCTGAAGCGTGGCCCACATGTGCTCGTCTGGGCTGTACGTGTCCTTCTCCCACTCCATG 1379915 Query 160386 AA-CTCTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAA 160444 || ||| || | |||| ||||| |||| | || ||| || | || ||||| Sbjct 1379916 AAGTTCTGCGCCT-CTCTGTTCCGCACCACGTATTTCACAAAGGCCCTCGAGACCACAAA 1379974 Query 160445 GTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGT 160504 ||||||| | || ||||| || || || || ||||||| | || | |||| | | Sbjct 1379975 GTACGCGTTTCCCGAGAACATGGGGGTGCTGATGGGCGGCG-GGCTCT-TCCTCTCGCCT 1380032 Query 160505 GTTAGACACCACTCCTTTC-ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTG-- 160561 || | | | | || | | ||| | | || ||| | ||||||| Sbjct 1380033 GT--CCCCCGGATGGTGTCGGTGACCTCGTAGTGGTACTCCCAGCGTCGTTTCTTGTGGC 1380090 Query 160562 CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGAC 160621 | ||| | |||| |||||||| ||||| |||| ||| ||||||| | | || Sbjct 1380091 TGCTGG--TTTGTTCGGTCTCTAGGCTGTTCCTCCCGTTGAGGAATTTCAGAGCCATCAC 1380148 Query 160622 GATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCA 160681 ||||| ||| || |||| |||||||| || || || ||| | | ||| |||| Sbjct 1380149 CATCTCCCTGTTGGTTTTGATGGGAAAGTCTGTCCCACAGGTGTTCAGAAGGTATCTCCA 1380208 Query 160682 TTTCGCGCTCAGGTCG-TGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCC 160740 || || || | | | ||||||| ||||||| || | ||||||||||| ||| || Sbjct 1380209 TTGGACG-TCGGATTGCAGCAGGTCGTTCATGCAGTTCAGGTCTGCCTGCACTCGGGACC 1380267 Query 160741 AGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACA 160800 | ||||||||||| || | |||| ||| || | | ||||| || || || || | Sbjct 1380268 ACGAAGCGTACACCACTCTTTCTAATTTGCTAGATATGAAGACATTGGGAAAGCAGGAAA 1380327 Query 160801 CGA--TTCCCACCACCGCCAGAAAGAACAT-CTTATCCGCCTTTCGGTCCACGTGCACGC 160857 | | ||| | || | || | ||| || | | | ||| |||| |||||||| | Sbjct 1380328 CTATGTTCTGAACAGC-CCTG--TGAAAATCCGGAGAAGACTTCTGGTCAACGTGCACAC 1380384 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 | |||| ||| ||||| ||||| || | | || | | || |||||||| ||||||| Sbjct 1380385 AGTACACGTTTTGAGGAGCGTAAATAGATCGCAGGAGTCGTTCAAACATCTCGATCTTAT 1380444 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 |||||||| || ||| | || || ||||| | | |||||| Sbjct 1380445 TGTGGATCACCATGGAGAATGCAATAGGAAAATTTGCCTCCTC 1380487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577145748856800