Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10130 161 1e-34 seq9909 100 3e-16 seq51 100 3e-16 >seq10130 Length=961328 Score = 161 bits (178), Expect = 1e-34 Identities = 947/1497 (63%), Gaps = 54/1497 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || | | || |||||||| ||||| || | | | Sbjct 294895 CCGCAGCACATGCTCATGCGCGTGTCGGTGGGGATCCACGGCCGGGACATCGACGCCGCC 294954 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||||| | || || ||||| Sbjct 294955 ATCGAGACGTACAACCTGCTGTCGGAGAAGTG-GTTCACGCACGCCTCGCCGACGCTCTT 295013 Query 75331 CAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || |||||| | |||||| ||||||| |||||||| | |||| ||||| Sbjct 295014 CAACGCCGG--CACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGAC 295071 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || || | | |||| || | ||||| |||| ||| Sbjct 295072 GACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCC 295131 Query 75449 GGGGGTATTGGGATGC-----ACATCCATGATGT-GAGAGCCAA-TAAATCTCGTATTCG 75501 || || || || || | | ||| | || | || || ||| | Sbjct 295132 GGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCTCGACGGGCAGCTACATCGCC------ 295185 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || | || | || | | || ||||| || || | ||| ||| || Sbjct 295186 -GGCACCAACGGCAACTCCAACGGCCTGGTGCCGATGCTGCGGGTCTACAACAACACCGC 295244 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTCG-CAAGGGGTCCATCGCGGTC------TACTTGG 75614 ||||| || | || ||||| | |||| || || ||| || ||| ||| Sbjct 295245 CCGCTACGTGGACCA----GGGCGGCAACAAGAGGCCCGGCGCCTTCGCCATGTACCTGG 295300 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAA 75673 | || ||||| ||| | | || ||||| ||| | | || ||| || | || Sbjct 295301 AGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAG-AACACGGGCAAGGAG 295359 Query 75674 GAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 ||| ||| || || ||||| | ||||||||| || ||||| ||||||| |||| Sbjct 295360 GAGCAGCGGGCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAGGCGG 295419 Query 75734 GTTGAGG--AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG 75791 || ||| | || | ||||| || | ||||| | || || || || || Sbjct 295420 GTGGAGAGCAACCAGGAC--TGGTCCCTGATGTGTCCCAGCGAGTGTCCCGGCCTGGACG 295477 Query 75792 AC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCC 75850 | || | ||| |||||||| || | |||||||||||||| || | |||||| | | Sbjct 295478 AGTGCTGGGGG-GAGGAGTTCGAGACGCTCTACACAAAGTACGAGGCGGAGGGGCGGGTG 295536 Query 75851 AATGCGACTGTACCAGCC--GCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 || | || ||| || | ||| || | || || || | || |||||||||| Sbjct 295537 AAGAAGGTGGTGAAGGCCCAGCAGCTGT--GGTACGCCATCATCGAGTCGCAGACGGAGA 295594 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 | || || || || ||||| |||||||| || || ||| ||||| ||||| |||| Sbjct 295595 CCGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACC 295654 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 |||| || |||||| || || || ||||| || | | |||| ||| ||||| | Sbjct 295655 TGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGCAAGGACG 295714 Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTC 76088 || ||| || ||||| |||| || |||||||| | ||| |||| ||| | Sbjct 295715 AGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCCGAG---C 295771 Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 | || || || | | || || | |||| ||| | | || || || ||| Sbjct 295772 GGACCTTCGACTTCAAGAAGCTGGCCGCCGTCACCAAGGTGATCGTGAAGAACCTGAACA 295831 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGAC 76205 ||||| || | ||| | || || || ||| | | ||| || || | ||| | Sbjct 295832 AGGTCATCGAGATAAACTACTACCCGGTCCCCGAGGCCGAGCG---CTCCAACAAGCGCC 295888 Query 76206 ACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG 76265 || | || || || | || || || ||||| || || | || || || |||||| Sbjct 295889 ACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGCTACC 295948 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | || || | || || || | | || | | ||||| || ||||| || |||| Sbjct 295949 CGTTCGAGAGCGCCGAGGCGCAGCTGCTCAACGTCCAGATCTTCGAGACCATCTACCACG 296008 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | | |||||||| || || || |||| | | | || |||| ||||| | |||| Sbjct 296009 CCGCGCTGGAGGCCAGCTGCGAGCTGGCGGCGGAGCTGGGCCCCTACGAGACGTACGAGG 296068 Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC-TC 76444 | || |||| || |||||||| |||| || ||||||| || || || | | | Sbjct 296069 GCTCGCCCGTCAGCCGGGGGGTGCTCCAGTACGACATGTGGG-AGAAGACCCCCACCGAC 296127 Query 76445 AACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | |||||| | | || ||||| ||| | | || | | ||||| || Sbjct 296128 CTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCCGGCACGGCGTGAGGAACAGCCTG 296187 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 || |||| || ||||| || ||||||||||| || ||| |||| || || || | | | Sbjct 296188 CTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATC 296247 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTC 76624 || | ||||| | ||||||||| | | |||| | || ||||| || ||| Sbjct 296248 GAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTCTCCGGCGAGTTCCAGATCGTC 296307 Query 76625 AACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||| |||||| |||| ||||| | | || || || ||| | |||| |||||| Sbjct 296308 AACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGGCTGTGGAGCGAGGACATGAAG 296364 >seq9909 Length=2276304 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | || ||||| ||||| || || || || ||||| |||||||| Sbjct 1378173 TGGCACGCCATCATCGAGTCGCAGACAGAGACGGGCACGCCGTACATGCTCTACAAGGAC 1378232 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| ||||| ||||| | ||| |||| || |||||| | ||||| ||| Sbjct 1378233 GCCTGCAACAGGAAGACCAACCAGCAAAATCTGGGCACCATCAAGTCCAGCAATCTGTGC 1378292 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || ||||| ||||||||||| ||| |||||| Sbjct 1378293 ACAGAAATCATAGAGTACACAAGTAAAGATGAG 1378325 >seq51 Length=752366 Score = 100 bits (110), Expect = 3e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| ||| | || ||||| ||||||||| ||||||||||| || ||||| ||| || Sbjct 77687 GAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGGATCTTCTTCTCTGGCTCATT-TGCTGC 77629 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 || || ||| |||||||| | || |||||||| ||||| || ||| |||||||| || Sbjct 77628 CATCTACTGGCTGAAGAAGAGAGGCCTCATGCCGGGCCTTACCTACTCCAATGAACTCAT 77569 Query 65196 TTCCCGAGATGAGG 65209 | | | ||||||| Sbjct 77568 TAGCAGGGATGAGG 77555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596493686518400