Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10130 291 7e-74 seq9955 100 3e-16 seq483 98.7 9e-16 >seq10130 Length=961328 Score = 291 bits (322), Expect = 7e-74 Identities = 993/1528 (65%), Gaps = 51/1528 (3%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || ||| || || |||| | || || || ||| |||||| ||||| | | Sbjct 296310 GTTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGC 296251 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| ||||| |||||| |||| Sbjct 296250 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGGGCCAG 296191 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || || |||| | ||||| | ||| ||||| ||| | ||||||||| Sbjct 296190 CAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA 296131 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 || ||| | || | || | |||||| |||||||| | || ||| || |||| Sbjct 296130 CAGGTCGGTGGGGGTCTTCTCCCACATGTCGTACTGGAGCACCCCCCGGCTGACGGGCGA 296071 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||| ||||||| ||||| || | ||| ||||| |||| ||| ||||| ||||| Sbjct 296070 GCCCTCGTACGTCTCGTAGGGGCCCAGCTCCGCCGCCAGCTCGCAGCTGGCCTCCAGCGC 296011 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 | | ||| || || ||| ||||| ||||||| | ||||||||||||||| | Sbjct 296010 GGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTCTCGAA 295951 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 ||| ||| | || |||| ||||||||||| || || ||||| | |||| || || Sbjct 295950 CGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGGCCG 295891 Query 138921 ATGGCGCAGATTTGA-CGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGA 138976 |||||| || || |||| |||| || || || || ||||||| ||||||| Sbjct 295890 GTGGCGCTTGTTGGAGCGCT----CGGCCTCGGGGACCGGGTAGTAGTTTATCTCGATGA 295835 Query 138977 TTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTAT 139035 ||||| | || ||||| |||||| || | || | | | | || ||| | Sbjct 295834 CCTTGTTCAGGTTCTTCACGATCACCTTGGT-GACGGCGGCCAGCTTCTTGAAGTCGAAG 295776 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 || | | || | ||| ||||| ||| |||||| || ||||| | |||| Sbjct 295775 GTCCGCTCG--GGCGT----GACGT--ACA----TGTTGAGGGCGATGGAGGCCAGGTTG 295728 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || ||||| ||||| | | || | || || | |||| || | || || ||| Sbjct 295727 CAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCAC 295668 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||||| || || | || || || ||||| || ||||| || || || ||||| ||||| Sbjct 295667 TTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATG 295608 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT 139275 || || ||||| || ||| || | ||| || ||| | ||| | ||| | Sbjct 295607 TAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACCACAGCT-----GCTGGG 295553 Query 139276 ATTTGACGCACGT------AAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA- 139328 || || ||| | | | || |||||||||| |||||| ||||| Sbjct 295552 CCTTCAC-CACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAAC 295494 Query 139329 TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCAT 139386 || | | || | | |||| || || |||||| | |||||||| || ||||| Sbjct 295493 TCCTCCCCCCAGCACTCGTC---CAGGCCGGGACACTCGCTGGGACACATCAGGGACCAG 295437 Query 139387 ACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAA 139446 | ||| || || |||||||||||||| || || ||||||| || | | | Sbjct 295436 TCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGG 295377 Query 139447 TCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACG 139506 || | ||| || || ||| ||| |||| |||| | ||||| || || ||| Sbjct 295376 TCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACG 295317 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGA 139563 || |||||| || ||||| || ||||| | ||||| || ||||| || || Sbjct 295316 TCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGG 295257 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || |||| || | | || ||| | || |||| ||||||| |||| ||| | | | Sbjct 295256 TCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTG 295197 Query 139624 CCGTTGGTGCTACGGATGGGACTG--TTGCGAGCTCGGACGTCATGT-ACATTGATGCCG 139680 |||||||||| |||| ||| |||| |||| | || | || | |||| Sbjct 295196 CCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAG--CGGATG-CAGCTCACCGCCACGCCG 295140 Query 139681 ATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCT 139739 || |||||| | | ||||| || | |||| | || | | || ||||| || || Sbjct 295139 ATGCCGCCGGCCGACTTGGAGATGAGGGCGCACT-GCTTGAGCGTGTCGTAGATGCCCTC 295081 Query 139740 TATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCC 139799 ||||||||||||| ||| | | ||| ||||| || || ||||| | || ||||| Sbjct 295080 GATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTGCC 295021 Query 139800 GGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859 ||| || || || || |||||||||||| | | ||||| || | |||||| Sbjct 295020 GGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGT 294961 Query 139860 TTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATG 139919 ||||||||| | || |||| |||||||| || || || || ||||| ||||| || Sbjct 294960 CTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGTG 294901 Query 139920 TTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTT 139979 || ||| ||||||||| || | ||| || ||| || | ||| |||||||| Sbjct 294900 CTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGGGTCTT 294841 Query 139980 GTAGCCAAAGTACCTATAGTTGAAATCG 140007 | |||| ||| | | ||| ||| ||| Sbjct 294840 GAAGCCGAAGAAGTTGTAGGAGAAGTCG 294813 >seq9955 Length=1786201 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || | || || ||| Sbjct 4070 GATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGTAGGTGGAGCCCAG 4011 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||||||| ||||| || || || || || || || Sbjct 4010 CGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3951 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 3950 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 3891 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 3890 CATCCAGAAGGAGTCCACCCTCCACCTGGT 3861 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | || || || || || || || || || || || || || || Sbjct 4300 ACCATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4241 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || ||| |||||||| ||||| || || || || || || Sbjct 4240 AGCGACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 4181 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || ||||||||||| ||| | | | |||| || || Sbjct 4180 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 4121 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 | ||| || || ||||| || || | | |||| Sbjct 4120 ACCATCCAGAAAGAATCCACCCTCCGCCTGGT 4089 >seq483 Length=217099 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | | Sbjct 215788 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTGGAGCCTAGC 215729 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| || || || || || || || Sbjct 215728 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 215669 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 215668 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 215609 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 215608 ATCCAGAAGGAGTCCACCCTCCACCTGGT 215580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449840350530400