Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9947 217 1e-50 seq642 91.5 1e-12 seq10154 89.7 4e-12 >seq9947 Length=1900904 Score = 217 bits (240), Expect = 1e-50 Identities = 900/1410 (64%), Gaps = 16/1410 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||| || || || || |||||||| | ||||| ||||| || || || || || Sbjct 881981 GCAGACACGTTTAGGATGCCGTTGGCATCAATGTCAAAGGTGACCTCTATCTGTGGCACT 881922 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| ||||||| |||| ||| | | ||| ||||||| ||| || || || Sbjct 881921 CCTCTGGGAGCAGGGGGGAGACCTGTGAGCTCAAACTTTCCCAGGAGATTGTTGTCCTTG 881862 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || || || || | | || || || | | || |||||||| || Sbjct 881861 GTCATGGCTCTCTCGCCTTCATACACCTGAATCAGGACGCCTGGCTGGTTATCTGAGTAC 881802 Query 281606 GTTGTAAATACTCTGGATTTTTTACA-AGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | ||| | |||| | | | | ||| || || ||||| | | |||| ||| Sbjct 881801 GTGGAAAAGA-TCTGAGTCTGCTTCGTAGGGATGGTGGTGTTCCGTTTGATAAGGGGGGT 881743 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||||| ||||||||||| || | || || || | || | ||||| | || | | Sbjct 881742 CATAACTCCACCAGCTGTCTCAATGCCCAGGGACAAGGGCGCCACATCCAGGAGCAGTAA 881683 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 || ||| | || || || | || | || ||||| || || | || ||||| || Sbjct 881682 ATCTTGGACGTTCTCTGAGGTGTCCCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTA 881623 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 || || ||||||||||| || | | ||| ||||| | | |||||||||| |||| Sbjct 881622 GGCCACCGCTTCATCAGGGTTGATACTTTTGTTTAGATCTCTACCATTGAAGAAATCCTG 881563 Query 281845 AAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 || || | ||| || || || || | | ||| || || |||| ||||||||||| | Sbjct 881562 TAGGAGCT-TCTGTATTTTGGGGATTCTTGTTGAGCCACCGACTAGGACAATTTCATGGA 881504 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 || ||||||||||| || | ||| || | || ||||| ||||| || | | Sbjct 881503 TCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACAGGTTCCAGTGTTCCCC 881444 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021 | || | ||| ||| || || || || || || || || ||| | || || || Sbjct 881443 TGAAGAGGTCCGAATTGAGCTCCTCAAAGCGTGCCCTTGT--GATTGAGGTGTAAAAGTC 881386 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||| || || |||| || |||| ||||| | | ||||| || |||| | | Sbjct 881385 AATGCCCTCAAACAGTGAGTCAATCTCAATGCTGGCCTGAGTGCTGGAGGATAAGGTCCT 881326 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTGATTCA 282137 || || | ||||| ||||| | ||||| | | |||| | | ||| |||| Sbjct 881325 CTTTGCCCTCTCACAAGCTGTGCGCAGTCTCCTCACGGCTCTCTTGTTCTGGCTGAT--- 881269 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 |||| | || | |||||| || || || || ||| | | || | || || |||| Sbjct 881268 -ATCTTTCTTGTGTTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTCGGTTGTCAA 881210 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || || | | || | || | || ||| | || | || | || || | Sbjct 881209 AGTCCTCCCCGCCAAGGTGTGTGTCCCCCGCTGTGGCTTTCACCTCAAATATGCCGTCCT 881150 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | || | | || ||| || || ||||| | |||||| || || ||||| Sbjct 881149 CAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGAGGACATTGC 881090 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 ||| || | |||||| || || || |||| || || || || || ||||| | Sbjct 881089 GCTCTCCTCTTTTGCCTTTATCCAGGCCGTAGGCAATGGCTGCTGCTGTGGGCTCATTTA 881030 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | || | || ||||| | || | || ||| ||||| || |||||||| || || | Sbjct 881029 TGATCCGCAGGACATTTATTCCGGAGATCACTCCGGCATCCTTTGTGGCTTGCCTCTGAG 880970 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 |||| ||||| || || || || || || || || | || || | ||| | | ||| Sbjct 880969 AATCATTAAAGTAAGCTGGCACTGTGATTACCGCGTTTGACACACTCTGTCCCAGAAAAG 880910 Query 282498 CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATT 282557 | ||| ||| | |||||||| | | ||| || ||||| | || ||| | | Sbjct 880909 CCTCGGCTATTTCTCTCATTTTAACCAGGACCATCGAAGAAATCTCCTCAGGACAGAAAG 880850 Query 282558 GCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617 ||| ||| | |||| || | | | || || |||| || || | Sbjct 880849 TCTTAATTTCTCCCTTATATTCCACCTGGACTTTAGGCTTCCCGTTGTCATTGATCACCT 880790 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 |||| ||||| ||||| || || || || | ||||| ||| ||| ||||| | Sbjct 880789 TAAAGGGCCAGAGCTTCATGTCAGACTGGACCACTGCGTCATCAAACCTTCTTCCAATGA 880730 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 ||||| |||||||| || || ||||| || || | ||| |||| | ||||| |||| Sbjct 880729 GACGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATGGCAACTTGGTTCTTGGCAGCAT 880670 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 ||||||| || ||||| || || || | ||||| ||||| || | || |||| Sbjct 880669 CTCCAATGAGCCTCTCTGTGTCAGTGAAGGCCACATAGCTAGGAGTGGTCCTGTTGCCTT 880610 Query 282798 GATCATTCGCAATAATTTCAACTTTACCAT 282827 |||| || || || ||||| ||||| |||| Sbjct 880609 GATCGTTGGCGATGATTTCCACTTTTCCAT 880580 >seq642 Length=144868 Score = 91.5 bits (100), Expect = 1e-12 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| || || || |||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 136988 CACATTGAGGATGCCGTTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGGACTCCTCT 136929 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC--AGATTATTATTATCTTTAGTG 281548 | |||||||||| || || || | |||| ||||| |||| |||||||||||| || Sbjct 136928 CGGAGCAGGTGGAATGCCAGTCAGTTCAAAT-TTCCCTAAGAT-ATTATTATCTTTGGTC 136871 Query 281549 AATTTTCGTTCACCCTCG 281566 | |||||| || ||| Sbjct 136870 ATGGCTCGTTCCCCTTCG 136853 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | ||| |||| |||||| | || | || | ||||| ||||||||||| || Sbjct 134724 CAAATACAGTGTTGGCTGGATTCATGGCCACCTGGTTCTTGGCAGCATCTCCAATGAGTC 134665 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||||| ||| ||||| | || ||||| ||||| |||| Sbjct 134664 TCTCTGTATCTGTGAAGGCCACATAACTTGGCGTTGTCCTGTTTCCTTGGTCATTGGCAA 134605 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 |||| || ||||| |||| || | | || ||||| | | || || |||| |||| Sbjct 134604 TAATCTCCACTTTGCCATGCTGGAAGATCCCCACACATGAATATGTGGTACCTAGGTCAA 134545 Query 282870 TACCAA 282875 | |||| Sbjct 134544 TGCCAA 134539 >seq10154 Length=897660 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| |||||||| || || || ||||| || | || |||| Sbjct 573166 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCCGTGGGCTCGTTAATGATACGCAGAACA 573107 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| |||| || || || || || || | || || || || || || Sbjct 573106 TTAAGTCCAGAAATGGTTCCCGCGTCCTTGGTCGCCTGGCGCTGAGAGTCATTGAAGTAG 573047 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||||||||| | || || | ||| || Sbjct 573046 GCAGGAACAGTCACCACAGCGTTTGTGAC 573018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740130605020680