Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9955 131 3e-25 seq483 125 1e-23 seq9883 91.5 3e-13 seq9925 87.8 4e-12 >seq9955 Length=1786201 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | | | || || ||||||||||| || | || ||||| Sbjct 4071 CCACCCCTGAGACGGAGGACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGAC 4130 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || || || || || || || Sbjct 4131 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4190 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| ||||| ||||| ||||| || || | || || || Sbjct 4191 ATGCCCTCCTTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 4250 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| || | ||||| ||||| || ||||| Sbjct 4251 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 4297 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | ||| || || || || ||||| || || || ||||| Sbjct 3843 CCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3902 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || || || || || || || Sbjct 3903 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3962 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || |||||||| || ||||| || || || || | || || || Sbjct 3963 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 4022 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || ||||| || || | ||||| || || |||||||| Sbjct 4023 TACAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 >seq483 Length=217099 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | ||| || || || || ||||| || || || ||||| Sbjct 215562 CCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 215621 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 215622 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 215681 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| ||||| ||||| || || || || |||| || || Sbjct 215682 ATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACC 215741 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 215742 TCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 215788 >seq9883 Length=2713415 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60147 GAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCA 60206 |||| | |||||||||| || || ||||| || || ||| | || ||||||||||||| Sbjct 2418598 GAGCCCTCTGGTGGTACTTCATCTCCAAAGGCATCGAGTACCTGGACACGGTGTTTTTCA 2418657 Query 60207 TACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGT 60266 | || ||||||||||| || ||||| | || | ||||| || || || | | |||| Sbjct 2418658 TTCTGAGGAAAAAGTTCAACCAGGTCACCTTCCTGCACGTCTACCACCACTGCAGCATGT 2418717 Query 60267 TTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | || | | ||| | ||||| || ||| | || ||||| || Sbjct 2418718 TCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 2418760 >seq9925 Length=2126579 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 ||||||||||| || || |||||| | || | | | |||||||| ||||| ||||| ||| Sbjct 288188 TGGTGGTACTACATCTCCAAAGGTGTGGAGTTCCTGGATACGGTCTTTTTTATACTAAGG 288129 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTT 60267 || ||||| || || || || || | ||||| || ||||| | ||| ||||| Sbjct 288128 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACCATGTT 288076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981699139051020