Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq9883 93.3 8e-14 seq9925 87.8 3e-12 >seq9883 Length=2713415 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 58377 GAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCA 58436 |||| | |||||||||| || || ||||| || || ||| | || || |||||||||| Sbjct 2418598 GAGCCCTCTGGTGGTACTTCATCTCCAAAGGCATCGAGTACCTGGACACGGTGTTTTTCA 2418657 Query 58437 TACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGT 58496 | || ||||||||||| || || || | ||| || ||||| || || || | | |||| Sbjct 2418658 TTCTGAGGAAAAAGTTCAACCAGGTCACCTTCCTGCACGTCTACCACCACTGCAGCATGT 2418717 Query 58497 TTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | || | | ||| | || || || ||| | |||||||| ||| Sbjct 2418718 TCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACAG 2418761 >seq9925 Length=2126579 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 ||||||||||| || || ||||| | || | | | ||||| || ||||| ||||| ||| Sbjct 288188 TGGTGGTACTACATCTCCAAAGGTGTGGAGTTCCTGGATACGGTCTTTTTTATACTAAGG 288129 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || ||||| || || || ||||| || ||||| || ||||| | ||| ||||| | | Sbjct 288128 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACCATGTTCATCCTG 288069 Query 58505 GGATGGGTAGGTATTAAATGG 58525 | ||| | ||||| || ||| Sbjct 288068 TGGTGGATCGGTATCAAGTGG 288048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903296240924800